| Package | Description |
|---|---|
| org.seqdoop.hadoop_bam |
| Modifier and Type | Field and Description |
|---|---|
protected FormatConstants.BaseQualityEncoding |
FastqOutputFormat.FastqRecordWriter.baseQualityFormat |
| Modifier and Type | Method and Description |
|---|---|
static FormatConstants.BaseQualityEncoding |
FormatConstants.BaseQualityEncoding.valueOf(String name)
Returns the enum constant of this type with the specified name.
|
static FormatConstants.BaseQualityEncoding[] |
FormatConstants.BaseQualityEncoding.values()
Returns an array containing the constants of this enum type, in
the order they are declared.
|
| Modifier and Type | Method and Description |
|---|---|
static void |
SequencedFragment.convertQuality(org.apache.hadoop.io.Text quality,
FormatConstants.BaseQualityEncoding current,
FormatConstants.BaseQualityEncoding target)
Convert quality scores in-place.
|
static int |
SequencedFragment.verifyQuality(org.apache.hadoop.io.Text quality,
FormatConstants.BaseQualityEncoding encoding)
Verify that the given quality bytes are within the range allowed for the specified encoding.
|
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