Uses of Class
org.seqdoop.hadoop_bam.FormatConstants.BaseQualityEncoding

Packages that use FormatConstants.BaseQualityEncoding

Package	Description
org.seqdoop.hadoop_bam

Uses of FormatConstants.BaseQualityEncoding in org.seqdoop.hadoop_bam

Fields in org.seqdoop.hadoop_bam declared as FormatConstants.BaseQualityEncoding

Modifier and Type	Field and Description
protected FormatConstants.BaseQualityEncoding	FastqOutputFormat.FastqRecordWriter.baseQualityFormat

Methods in org.seqdoop.hadoop_bam that return FormatConstants.BaseQualityEncoding

Modifier and Type	Method and Description
static FormatConstants.BaseQualityEncoding	FormatConstants.BaseQualityEncoding.valueOf(String name) Returns the enum constant of this type with the specified name.
static FormatConstants.BaseQualityEncoding[]	FormatConstants.BaseQualityEncoding.values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods in org.seqdoop.hadoop_bam with parameters of type FormatConstants.BaseQualityEncoding

Modifier and Type	Method and Description
static void	SequencedFragment.convertQuality(org.apache.hadoop.io.Text quality, FormatConstants.BaseQualityEncoding current, FormatConstants.BaseQualityEncoding target) Convert quality scores in-place.
static int	SequencedFragment.verifyQuality(org.apache.hadoop.io.Text quality, FormatConstants.BaseQualityEncoding encoding) Verify that the given quality bytes are within the range allowed for the specified encoding.