Uses of Class
org.seqdoop.hadoop_bam.VariantContextWritable

Packages that use VariantContextWritable

Package	Description
org.seqdoop.hadoop_bam

Uses of VariantContextWritable in org.seqdoop.hadoop_bam

Methods in org.seqdoop.hadoop_bam that return VariantContextWritable

Modifier and Type	Method and Description
VariantContextWritable	VCFRecordReader.getCurrentValue()
VariantContextWritable	BCFRecordReader.getCurrentValue()

Methods in org.seqdoop.hadoop_bam that return types with arguments of type VariantContextWritable

Modifier and Type	Method and Description
org.apache.hadoop.mapreduce.RecordReader<org.apache.hadoop.io.LongWritable,VariantContextWritable>	VCFInputFormat.createRecordReader(org.apache.hadoop.mapreduce.InputSplit split, org.apache.hadoop.mapreduce.TaskAttemptContext ctx) Returns a BCFRecordReader or VCFRecordReader as appropriate, initialized with the given parameters.
org.apache.hadoop.mapreduce.RecordWriter<K,VariantContextWritable>	KeyIgnoringVCFOutputFormat.getRecordWriter(org.apache.hadoop.mapreduce.TaskAttemptContext ctx) setHeader or readHeaderFrom must have been called first.
org.apache.hadoop.mapreduce.RecordWriter<K,VariantContextWritable>	KeyIgnoringVCFOutputFormat.getRecordWriter(org.apache.hadoop.mapreduce.TaskAttemptContext ctx, org.apache.hadoop.fs.Path out)

Methods in org.seqdoop.hadoop_bam with parameters of type VariantContextWritable

Modifier and Type	Method and Description
void	KeyIgnoringVCFRecordWriter.write(K ignored, VariantContextWritable vc)
void	KeyIgnoringBCFRecordWriter.write(K ignored, VariantContextWritable vc)