Packages

p

sessl

pssalib

package pssalib

Type Members

  1. case class DM(path: String, simulatorBinary: String = "./simulator", analyzerBinary: String = "./analyzer") extends PSSALibSimulator with Product with Serializable
  2. class Experiment extends AbstractExperiment with DynamicSimulationRuns with SBMLFileManipulation

    A PSSALib experiment gets executed by invoking the native binary (which must be installed separately).

    A PSSALib experiment gets executed by invoking the native binary (which must be installed separately). To configure the model with parameter values, the SBML model file is copied and modified before it becomes the input for the simulator. A temporary directory is created for these model file copies. The individual simulation runs are started in Futures to enable concurrency.

  3. trait Observation extends Experiment with AbstractObservation

    Observe results by working with files created in the temporary directory.

    Observe results by working with files created in the temporary directory. Invokes the analyzer binary to create CSV files from the results.

  4. case class PDM(path: String, simulatorBinary: String = "./simulator", analyzerBinary: String = "./analyzer") extends PSSALibSimulator with Product with Serializable
  5. trait PSSALibSimulator extends Simulator

    The PSSALibSimulator instances contain information about the location of the simulator and analyzer binaries.

    The PSSALibSimulator instances contain information about the location of the simulator and analyzer binaries. Default values (for Linux) are specified where possible.

  6. case class PSSA_CR(path: String, simulatorBinary: String = "./simulator", analyzerBinary: String = "./analyzer") extends PSSALibSimulator with Product with Serializable
  7. trait ParallelExecution extends Experiment with AbstractParallelExecution

  8. trait SBMLFileManipulation extends AnyRef

    A small helper trait for copying and modifying SBML files.

  9. case class SPDM(path: String, simulatorBinary: String = "./simulator", analyzerBinary: String = "./analyzer") extends PSSALibSimulator with Product with Serializable

Ungrouped