Trait

sessl.sbmlsim

Observation

Related Doc: package sbmlsim

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trait Observation extends SimpleObservation with SBMLSimResultHandling

Support for observing of SBMLsimulator runs. It seems the simulators always provide the complete state vector for every computed step, so this here just implements some kind of sessl-compliant cherry-picking.

Self Type
Observation with Experiment
Linear Supertypes
SBMLSimResultHandling, ResultHandling, SimpleObservation, AbstractObservation, ExperimentConfiguration, Logging, StrictLogging, AnyRef, Any
Known Subclasses
SimpleTestExperiment
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Inherited
  1. Observation
  2. SBMLSimResultHandling
  3. ResultHandling
  4. SimpleObservation
  5. AbstractObservation
  6. ExperimentConfiguration
  7. Logging
  8. StrictLogging
  9. AnyRef
  10. Any
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Visibility
  1. Public
  2. All

Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

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    Definition Classes
    AnyRef → Any

  3. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  4. def addValueFor(runID: Int, internalName: String, value: TimeStampedData): Unit

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    Attributes
    protected[sessl]
    Definition Classes
    SimpleObservation

  5. final def asInstanceOf[T0]: T0

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    Definition Classes
    Any

  6. def checkResultHandlingCorrectness(methodName: String): Unit

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    Definition Classes
    ResultHandling

  7. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  8. def collectExperimentResultsAspects(): Unit

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    Definition Classes
    AbstractObservation → ExperimentConfiguration

  9. def collectReplicationsResults(assignId: Int): ObservationReplicationsResultsAspect

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    Definition Classes
    SimpleObservation → AbstractObservation

  10. def collectReplicationsResultsAspects(assignId: Int): Unit

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    Definition Classes
    AbstractObservation → ExperimentConfiguration

  11. def collectResults(runId: Int, removeData: Boolean): ObservationRunResultsAspect

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    Definition Classes
    SimpleObservation → AbstractObservation

  12. def collectRunResultsAspects(runId: Int): Unit

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    Definition Classes
    AbstractObservation → ExperimentConfiguration

  13. def configure(): Unit

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    Attributes
    protected
    Definition Classes
    ExperimentConfiguration

  14. def considerResults(runId: Int, assignmentId: Int, results: MultiTable): Unit

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    Method to be overridden to extract data from the results.

    Method to be overridden to extract data from the results. They use a lot of memory, so the results of each run will be discarded after calling this method.

    Definition Classes
    Observation → SBMLSimResultHandling

  15. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  16. def equals(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  17. def experimentDone(): Unit

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    Attributes
    protected
    Definition Classes
    ExperimentConfiguration

  18. def finalize(): Unit

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  19. final def getClass(): Class[_]

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    Definition Classes
    AnyRef → Any

  20. def hashCode(): Int

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    Definition Classes
    AnyRef → Any

  21. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any

  22. def isObservationTimingDefined: Boolean

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    Definition Classes
    AbstractObservation

  23. val logger: Logger

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    Attributes
    protected
    Definition Classes
    StrictLogging

  24. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  25. final def notify(): Unit

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    Definition Classes
    AnyRef

  26. final def notifyAll(): Unit

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    Definition Classes
    AnyRef

  27. lazy val observationTimes: List[Double]

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    Definition Classes
    AbstractObservation

  28. def observe(binds: DataElemBinding*): Unit

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    Definition Classes
    AbstractObservation

  29. final def observeAt[T <: AnyVal](r: ValueRange[T])(implicit n: Numeric[T]): Unit

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    Definition Classes
    AbstractObservation

  30. final def observeAt(observationTimes: Double*): Unit

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    Definition Classes
    AbstractObservation

  31. def replicationsDone(assignID: Int): Unit

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    Attributes
    protected
    Definition Classes
    ExperimentConfiguration

  32. def resultsHandlingIsCalled(): Unit

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    Attributes
    protected
    Definition Classes
    ResultHandling

  33. lazy val reverseVariableBindings: Map[String, String]

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    Definition Classes
    AbstractObservation

  34. def runDone(runID: Int): Unit

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    Attributes
    protected
    Definition Classes
    ExperimentConfiguration

  35. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
    AnyRef

  36. def toString(): String

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    Definition Classes
    AnyRef → Any

  37. def variableBindings: Map[String, Set[String]]

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    Definition Classes
    AbstractObservation

  38. def varsToBeObserved: Set[String]

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    Definition Classes
    AbstractObservation

  39. final def wait(): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  40. final def wait(arg0: Long, arg1: Int): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  41. final def wait(arg0: Long): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  42. def withExperimentResult(f: (ObservationExperimentResultsAspect) ⇒ Unit): ListBuffer[(ExperimentResults) ⇒ Unit]

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    Definition Classes
    AbstractObservation

  43. def withReplicationsResult(f: (ObservationReplicationsResultsAspect) ⇒ Unit): ListBuffer[(ReplicationsResults) ⇒ Unit]

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    Definition Classes
    AbstractObservation

  44. def withRunResult(f: (ObservationRunResultsAspect) ⇒ Unit): ListBuffer[(RunResults) ⇒ Unit]

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    Definition Classes
    AbstractObservation

Inherited from SBMLSimResultHandling

Inherited from ResultHandling

Inherited from SimpleObservation

Inherited from AbstractObservation

Inherited from ExperimentConfiguration

Inherited from Logging

Inherited from StrictLogging

Inherited from AnyRef

Inherited from Any

Ungrouped