sbmlsim

Type Members

1. trait BasicSBMLSimSimulator extends Simulator with SBMLSimAlgorithm[AbstractDESSolver]

   

   Super type of all ODE solvers provided by SBMLsimulator.

2. case class DormandPrince54(stepSize: Double = ...) extends BasicSBMLSimSimulator with CreatableFromVariables[DormandPrince54] with Product with Serializable

   

3. case class Euler(stepSize: Double = ...) extends BasicSBMLSimSimulator with CreatableFromVariables[Euler] with Product with Serializable

   

4. class Experiment extends AbstractExperiment with SBMLSimResultHandling

   

   Encapsulates the SBMLsimulator (see http://www.ra.cs.uni-tuebingen.de/software/SBMLsimulator).

   Encapsulates the SBMLsimulator (see http://www.ra.cs.uni-tuebingen.de/software/SBMLsimulator). As only the core is provided at Sourceforge (http://sourceforge.net/projects/sbml-simulator/), this will be integrated (i.e., no functionality to set up experiments via the GUI is reused here).

5. trait Observation extends SimpleObservation with SBMLSimResultHandling

   

   Support for observing of SBMLsimulator runs.

   Support for observing of SBMLsimulator runs. It seems the simulators always provide the complete state vector for every computed step, so this here just implements some kind of sessl-compliant cherry-picking.

6. trait ParallelExecution extends AbstractParallelExecution

   

   Support for parallel execution.

7. case class Rosenbrock(stepSize: Double = ...) extends BasicSBMLSimSimulator with CreatableFromVariables[Rosenbrock] with Product with Serializable

   

8. trait SBMLSimAlgorithm[+T] extends AnyRef

   

   Types to represent the algorithms offered by SBMLsimulator.

9. trait SBMLSimResultHandling extends ResultHandling

   

   Trait to let mix-ins handle results.