t

sessl.sbmlsim

Observation

trait Observation extends SimpleObservation with SBMLSimResultHandling

Support for observing of SBMLsimulator runs. It seems the simulators always provide the complete state vector for every computed step, so this here just implements some kind of sessl-compliant cherry-picking.

Self Type
Observation with Experiment
Linear Supertypes
SBMLSimResultHandling, ResultHandling, SimpleObservation, AbstractObservation, ExperimentConfiguration, Logging, StrictLogging, AnyRef, Any
Known Subclasses
SimpleTestExperiment
Ordering
  1. Alphabetic
  2. By Inheritance
Inherited
  1. Observation
  2. SBMLSimResultHandling
  3. ResultHandling
  4. SimpleObservation
  5. AbstractObservation
  6. ExperimentConfiguration
  7. Logging
  8. StrictLogging
  9. AnyRef
  10. Any
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Visibility
  1. Public
  2. All

Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  4. def addValueFor(runID: Int, internalName: String, value: TimeStampedData[_]): Unit
    Attributes
    protected[sessl]
    Definition Classes
    SimpleObservation
  5. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  6. def checkResultHandlingCorrectness(methodName: String): Unit
    Definition Classes
    ResultHandling
  7. def clone(): AnyRef
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @native() @throws( ... )
  8. def collectExperimentResultsAspects(): Unit
    Definition Classes
    AbstractObservation → ExperimentConfiguration
  9. def collectReplicationsResults(assignId: Int): ObservationReplicationsResultsAspect
    Definition Classes
    SimpleObservation → AbstractObservation
  10. def collectReplicationsResultsAspects(assignId: Int): Unit
    Definition Classes
    AbstractObservation → ExperimentConfiguration
  11. def collectResults(runId: Int, removeData: Boolean): ObservationRunResultsAspect
    Definition Classes
    SimpleObservation → AbstractObservation
  12. def collectRunResultsAspects(runId: Int): Unit
    Definition Classes
    AbstractObservation → ExperimentConfiguration
  13. def configure(): Unit
    Attributes
    protected
    Definition Classes
    ExperimentConfiguration
  14. def considerResults(runId: Int, assignmentId: Int, results: MultiTable): Unit

    Method to be overridden to extract data from the results.

    Method to be overridden to extract data from the results. They use a lot of memory, so the results of each run will be discarded after calling this method.

    Definition Classes
    Observation → SBMLSimResultHandling
  15. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  16. def equals(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  17. def experimentDone(): Unit
    Attributes
    protected
    Definition Classes
    ExperimentConfiguration
  18. def finalize(): Unit
    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  19. final def getClass(): Class[_]
    Definition Classes
    AnyRef → Any
    Annotations
    @native()
  20. def hashCode(): Int
    Definition Classes
    AnyRef → Any
    Annotations
    @native()
  21. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  22. def isObservationTimingDefined: Boolean
    Definition Classes
    AbstractObservation
  23. val logger: Logger
    Attributes
    protected
    Definition Classes
    StrictLogging
  24. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  25. final def notify(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  26. final def notifyAll(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  27. lazy val observationTimes: List[Double]
    Definition Classes
    AbstractObservation
  28. def observe(binds: DataElemBinding*): Unit
    Definition Classes
    AbstractObservation
  29. final def observeAt[T <: AnyVal](r: ValueRange[T])(implicit n: Numeric[T]): Unit
    Definition Classes
    AbstractObservation
  30. final def observeAt(observationTimes: Double*): Unit
    Definition Classes
    AbstractObservation
  31. def replicationsDone(assignID: Int): Unit
    Attributes
    protected
    Definition Classes
    ExperimentConfiguration
  32. def resultsHandlingIsCalled(): Unit
    Attributes
    protected
    Definition Classes
    ResultHandling
  33. lazy val reverseVariableBindings: Map[String, String]
    Definition Classes
    AbstractObservation
  34. def runDone(runID: Int): Unit
    Attributes
    protected
    Definition Classes
    ExperimentConfiguration
  35. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  36. def toString(): String
    Definition Classes
    AnyRef → Any
  37. def variableBindings: Map[String, Set[String]]
    Definition Classes
    AbstractObservation
  38. def varsToBeObserved: Set[String]
    Definition Classes
    AbstractObservation
  39. final def wait(): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  40. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  41. final def wait(arg0: Long): Unit
    Definition Classes
    AnyRef
    Annotations
    @native() @throws( ... )
  42. def withExperimentResult(f: (ObservationExperimentResultsAspect) ⇒ Unit): Unit
    Definition Classes
    AbstractObservation
  43. def withReplicationsResult(f: (ObservationReplicationsResultsAspect) ⇒ Unit): Unit
    Definition Classes
    AbstractObservation
  44. def withRunResult(f: (ObservationRunResultsAspect) ⇒ Unit): Unit
    Definition Classes
    AbstractObservation

Inherited from SBMLSimResultHandling

Inherited from ResultHandling

Inherited from SimpleObservation

Inherited from AbstractObservation

Inherited from ExperimentConfiguration

Inherited from Logging

Inherited from StrictLogging

Inherited from AnyRef

Inherited from Any

Ungrouped