edu.cornell.mannlib.vitro.webapp.ontology.update

Class TBoxUpdater

java.lang.Object

edu.cornell.mannlib.vitro.webapp.ontology.update.TBoxUpdater

public class TBoxUpdater
extends Object

Performs knowledge base updates to the tbox to align with a new ontology version

Constructor Summary

Constructors

Constructor and Description
TBoxUpdater(UpdateSettings settings, ChangeLogger logger, ChangeRecord record) Constructor

Method Summary

Modifier and Type	Method and Description
void	modifyPropertyQualifications() Update application ontology data for domain and range-qualified properties to use any applicable settings from obsolete subproperties
void	removeObsoleteAnnotations()
void	renameProperty(AtomicOntologyChange changeObj)
void	updateAnnotationModel() Update a knowledge base to align with changes to the vitro annotation model in a new version of the ontology.
void	updateDefaultAnnotationValues()
void	updateDefaultAnnotationValues(String subjectURI) Update a knowledge base to align with changes to vitro annotation property default values in a new version of the ontology.
boolean	usesGroup(org.apache.jena.rdf.model.Model model, org.apache.jena.rdf.model.Resource theClassGroup)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

TBoxUpdater

public TBoxUpdater(UpdateSettings settings,
                   ChangeLogger logger,
                   ChangeRecord record)

Constructor

Parameters:

settings - - update settings

logger - - for writing to the change log and the error log.

record - - for writing to the additions model and the retractions model.

Method Detail

modifyPropertyQualifications

public void modifyPropertyQualifications()
                                  throws IOException

Update application ontology data for domain and range-qualified properties to use any applicable settings from obsolete subproperties

Throws:

IOException

updateDefaultAnnotationValues

public void updateDefaultAnnotationValues()
                                   throws IOException

Throws:

IOException

updateDefaultAnnotationValues

public void updateDefaultAnnotationValues(String subjectURI)
                                   throws IOException

Update a knowledge base to align with changes to vitro annotation property default values in a new version of the ontology. The two versions of the ontology and the knowledge base to be updated are provided in the class constructor and are referenced via class level variables. If the default value (i.e. the value that is provided in the vivo-core annotations files) of a vitro annotation property has been changed for a vivo core class, and that default value has not been changed in the site knowledge base, then update the value in the site knowledge base to be the new default. Also, if a new vitro annotation property setting (i.e. either an existing setting applied to an existing class where it wasn't applied before, or an existing setting applied to a new class) has been applied to a vivo core class then copy that new property statement into the site model. If a property setting for a class exists in the old ontology but not in the new one, then that statement will be removed from the site knowledge base. Writes to the change log file, the error log file, and the incremental change knowledge base. Note: as specified, this method for now assumes that no new vitro annotation properties have been introduced. This should be updated for future versions.

Throws:

IOException

updateAnnotationModel

public void updateAnnotationModel()
                           throws IOException

Update a knowledge base to align with changes to the vitro annotation model in a new version of the ontology. The two versions of the ontology and the knowledge base to be updated are provided in the class constructor and are referenced via class level variables. Currently, this method only handles deletions of a ClassGroup Writes to the change log file, the error log file, and the incremental change knowledge base.

Throws:

IOException

usesGroup

public boolean usesGroup(org.apache.jena.rdf.model.Model model,
                         org.apache.jena.rdf.model.Resource theClassGroup)
                  throws IOException

Throws:

IOException

removeObsoleteAnnotations

public void removeObsoleteAnnotations()
                               throws IOException

Throws:

IOException

renameProperty

public void renameProperty(AtomicOntologyChange changeObj)
                    throws IOException

Throws:

IOException