Package edu.cornell.mannlib.vitro.webapp.dao.jena

Class VClassDaoJena

java.lang.Object

edu.cornell.mannlib.vitro.webapp.dao.jena.JenaBaseDaoCon

edu.cornell.mannlib.vitro.webapp.dao.jena.JenaBaseDao

edu.cornell.mannlib.vitro.webapp.dao.jena.VClassDaoJena

All Implemented Interfaces:

VClassDao

Direct Known Subclasses:

VClassDaoSDB

public class VClassDaoJena
extends JenaBaseDao
implements VClassDao

Field Summary

Fields

Modifier and Type	Field	Description
protected static org.apache.commons.logging.Log	log

Fields inherited from class edu.cornell.mannlib.vitro.webapp.dao.jena.JenaBaseDao

DEFAULT_NAMESPACE, KEEP_ONLY_IF_FALSE, KEEP_ONLY_IF_TRUE, NONUSER_NAMESPACES, PREFERRED_LANGUAGES, PSEUDO_BNODE_NS, XSD, xsdDateFormat, xsdDateTimeFormat

Fields inherited from class edu.cornell.mannlib.vitro.webapp.dao.jena.JenaBaseDaoCon

ADDITIONAL_LINK, APPLICATION_ABOUTTEXT, APPLICATION_ACKNOWLEGETEXT, APPLICATION_CONTACTMAIL, APPLICATION_COPYRIGHTANCHOR, APPLICATION_COPYRIGHTURL, APPLICATION_CORRECTIONMAIL, APPLICATION_THEMEDIR, CLASSGROUP, DATAPROPERTY_ISEXTERNALID, DESCRIPTION_ANNOT, DISPLAY_LIMIT, DISPLAY_RANK, DISPLAY_RANK_ANNOT, EDITING, EXAMPLE, EXAMPLE_ANNOT, HIDDEN_FROM_DISPLAY_BELOW_ROLE_LEVEL_ANNOT, HIDDEN_FROM_PUBLISH_BELOW_ROLE_LEVEL_ANNOT, IN_CLASSGROUP, IND_MAIN_IMAGE, LINK, LINK_ANCHOR, LINK_DISPLAYRANK, LINK_TYPE, LINK_URL, MODTIME, MONIKER, ONTOLOGY_PREFIX_ANNOT, PERMISSION, PERMISSION_SET_FOR_NEW_USERS, PERMISSION_SET_FOR_PUBLIC, PERMISSIONSET, PERMISSIONSET_HAS_PERMISSION, PORTAL, PRIMARY_LINK, PROHIBITED_FROM_UPDATE_BELOW_ROLE_LEVEL_ANNOT, PROPERTY_ADDLINKSUPPRESSED, PROPERTY_COLLATEBYSUBCLASSANNOT, PROPERTY_CUSTOM_LIST_VIEW_ANNOT, PROPERTY_CUSTOMDISPLAYVIEWANNOT, PROPERTY_CUSTOMENTRYFORMANNOT, PROPERTY_CUSTOMSEARCHVIEWANNOT, PROPERTY_CUSTOMSHORTVIEWANNOT, PROPERTY_DELETELINKSUPPRESSED, PROPERTY_EDITLINKSUPPRESSED, PROPERTY_ENTITYSORTDIRECTION, PROPERTY_ENTITYSORTFIELD, PROPERTY_FULLPROPERTYNAMEANNOT, PROPERTY_INPROPERTYGROUPANNOT, PROPERTY_OBJECTINDIVIDUALSORTPROPERTY, PROPERTY_OFFERCREATENEWOPTIONANNOT, PROPERTY_SELECTFROMEXISTINGANNOT, PROPERTY_STUBOBJECTPROPERTYANNOT, PROPERTYGROUP, PUBLIC_DESCRIPTION_ANNOT, SEARCH_BOOST_ANNOT, SHORTDEF, USERACCOUNT, USERACCOUNT_ARGON2_PASSWORD, USERACCOUNT_EMAIL_ADDRESS, USERACCOUNT_EMAIL_KEY, USERACCOUNT_EXTERNAL_AUTH_ID, USERACCOUNT_EXTERNAL_AUTH_ONLY, USERACCOUNT_FIRST_NAME, USERACCOUNT_HAS_PERMISSION_SET, USERACCOUNT_LAST_LOGIN_TIME, USERACCOUNT_LAST_NAME, USERACCOUNT_LOGIN_COUNT, USERACCOUNT_MD5_PASSWORD, USERACCOUNT_OLD_PASSWORD, USERACCOUNT_PASSWORD_CHANGE_REQUIRED, USERACCOUNT_PASSWORD_LINK_EXPIRES, USERACCOUNT_PROXY_EDITOR_FOR, USERACCOUNT_ROOT_USER, USERACCOUNT_STATUS, VITRO_PUBLIC_ONTOLOGY

Constructor Summary

Constructors

Constructor	Description
VClassDaoJena(WebappDaoFactoryJena wadf, boolean isUnderlyingStoreReasoned)

Method Summary

Modifier and Type	Method	Description
void	addDisjointWithClass(String classURI, String disjointClassURI)
void	addEquivalentClass(String classURI, String equivalentClassURI)
void	addSubclass(VClass vclass, VClass subclass)
void	addSubclass(String vclassURI, String subclassURI)
void	addSuperclass(VClass vclass, VClass superclass)
void	addSuperclass(String vclassURI, String superclassURI)
void	addVClassesToGroup(VClassGroup group)
void	addVClassesToGroup(VClassGroup group, boolean includeUninstantiatedClasses)	Deprecated.
void	addVClassesToGroup(VClassGroup group, boolean includeUninstantiatedClasses, boolean getIndividualCount)	Deprecated.
void	addVClassesToGroups(List<VClassGroup> groups)
void	deleteClasses2Classes(Classes2Classes c2c)
void	deleteClasses2Classes(Classes2Classes c2c, org.apache.jena.ontology.OntModel ontModel)
void	deleteVClass(VClass cls)
void	deleteVClass(VClass cls, org.apache.jena.ontology.OntModel ontModel)
void	deleteVClass(String URI)
void	deleteVClass(String URI, org.apache.jena.ontology.OntModel ontModel)
List<String>	getAllSubClassURIs(String classURI)
void	getAllSubClassURIs(String classURI, HashSet<String> subtree)
List<String>	getAllSuperClassURIs(String classURI)
void	getAllSuperClassURIs(String classURI, HashSet<String> subtree)
List<VClass>	getAllVclasses()
VClass	getBottomConcept()	Returns the bottom concept for the current modeling language (e.g.
List<String>	getDisjointWithClassURIs(String classURI)
List<String>	getEquivalentClassURIs(String classURI)
String	getLabelForClass(org.apache.jena.ontology.OntClass cls, boolean withPrefix, boolean forPickList)
protected org.apache.jena.ontology.OntModel	getOntModel()
List<VClass>	getOntologyRootClasses(String ontologyURI)
List<VClass>	getRootClasses()
List<String>	getSubClassURIs(String classURI)
List<String>	getSuperClassURIs(String classURI, boolean direct)
VClass	getTopConcept()	Returns the top concept for the current modeling language (e.g.
VClass	getVClassByURI(String URIStr)
List<VClass>	getVClassesForProperty(String propertyURI, boolean domainSide)
List<VClass>	getVClassesForProperty(String vclassURI, String propertyURI)
void	insertNewClasses2Classes(Classes2Classes c2c)
void	insertNewClasses2Classes(Classes2Classes c2c, org.apache.jena.ontology.OntModel ontModel)
void	insertNewVClass(VClass cls)
int	insertNewVClass(VClass cls, org.apache.jena.ontology.OntModel ontModel)
boolean	isSubClassOf(VClass vc1, VClass vc2)
boolean	isSubClassOf(String vclassURI1, String vclassURI2)
protected boolean	isUnderlyingStoreReasoned()
void	removeDisjointWithClass(String classURI, String disjointClassURI)
void	removeEquivalentClass(String classURI, String equivalentClassURI)
void	removeSubclass(VClass vclass, VClass subclass)
void	removeSubclass(String vclassURI, String subclassURI)
void	removeSuperclass(VClass vclass, VClass superclass)
void	removeSuperclass(String vclassURI, String superclassURI)
void	updateVClass(VClass cls)
void	updateVClass(VClass cls, org.apache.jena.ontology.OntModel ontModel)

Methods inherited from class edu.cornell.mannlib.vitro.webapp.dao.jena.JenaBaseDao

addPropertyBooleanValue, addPropertyDateTimeValue, addPropertyDateValue, addPropertyFloatValue, addPropertyIntValue, addPropertyLongValue, addPropertyNonNegativeIntValue, addPropertyResourceURIValue, addPropertyResourceValue, addPropertyStringValue, checkURI, getClassURIStr, getDefaultLanguage, getLabel, getLabelLiteral, getLabelLiteral, getLabelOrId, getLocalNameOrId, getMostRestrictiveRoleLevel, getOntClass, getOntModelSelector, getPropertyBooleanValue, getPropertyDateTimeValue, getPropertyDateValue, getPropertyFloatValue, getPropertyIntValue, getPropertyLongValue, getPropertyNonNegativeIntegerValue, getPropertyNonNegativeIntValue, getPropertyResourceURIValues, getPropertyStringValue, getSmartRemoval, getWebappDaoFactory, getWritableOntModelList, isBooleanClassExpression, listDirectObjectPropertySubjects, listDirectObjectPropertyValues, makeNodeForURI, removeRulesMentioningResource, smartRemove, tryLiteralForPreferredLanguages, updatePlainLiteralValue, updatePlainLiteralValue, updatePropertyBooleanValue, updatePropertyDateTimeValue, updatePropertyDateValue, updatePropertyFloatValue, updatePropertyIntValue, updatePropertyLongValue, updatePropertyNonNegativeIntegerValue, updatePropertyNonNegativeIntValue, updatePropertyResourceURIValue, updatePropertyResourceURIValue, updatePropertyResourceURIValues, updatePropertyResourceValue, updatePropertyResourceValue, updatePropertyStringValue, updateRDFSLabel, updateRDFSLabel

Methods inherited from class edu.cornell.mannlib.vitro.webapp.dao.jena.JenaBaseDaoCon

getConstModel

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

log

protected static final org.apache.commons.logging.Log log

Constructor Detail

VClassDaoJena

public VClassDaoJena(WebappDaoFactoryJena wadf,
                     boolean isUnderlyingStoreReasoned)

Method Detail

getOntModel

protected org.apache.jena.ontology.OntModel getOntModel()

Overrides:

getOntModel in class JenaBaseDao

isUnderlyingStoreReasoned

protected boolean isUnderlyingStoreReasoned()

getLabelForClass

public String getLabelForClass(org.apache.jena.ontology.OntClass cls,
                               boolean withPrefix,
                               boolean forPickList)

deleteVClass

public void deleteVClass(VClass cls)

Specified by:

deleteVClass in interface VClassDao

deleteVClass

public void deleteVClass(String URI)

Specified by:

deleteVClass in interface VClassDao

deleteVClass

public void deleteVClass(String URI,
                         org.apache.jena.ontology.OntModel ontModel)

deleteVClass

public void deleteVClass(VClass cls,
                         org.apache.jena.ontology.OntModel ontModel)

getDisjointWithClassURIs

public List<String> getDisjointWithClassURIs(String classURI)

Specified by:

getDisjointWithClassURIs in interface VClassDao

addDisjointWithClass

public void addDisjointWithClass(String classURI,
                                 String disjointClassURI)

Specified by:

addDisjointWithClass in interface VClassDao

removeDisjointWithClass

public void removeDisjointWithClass(String classURI,
                                    String disjointClassURI)

Specified by:

removeDisjointWithClass in interface VClassDao

getEquivalentClassURIs

public List<String> getEquivalentClassURIs(String classURI)

Specified by:

getEquivalentClassURIs in interface VClassDao

addSuperclass

public void addSuperclass(VClass vclass,
                          VClass superclass)

Specified by:

addSuperclass in interface VClassDao

addSuperclass

public void addSuperclass(String vclassURI,
                          String superclassURI)

Specified by:

addSuperclass in interface VClassDao

removeSuperclass

public void removeSuperclass(VClass vclass,
                             VClass superclass)

Specified by:

removeSuperclass in interface VClassDao

removeSuperclass

public void removeSuperclass(String vclassURI,
                             String superclassURI)

Specified by:

removeSuperclass in interface VClassDao

addSubclass

public void addSubclass(VClass vclass,
                        VClass subclass)

Specified by:

addSubclass in interface VClassDao

addSubclass

public void addSubclass(String vclassURI,
                        String subclassURI)

Specified by:

addSubclass in interface VClassDao

removeSubclass

public void removeSubclass(VClass vclass,
                           VClass subclass)

Specified by:

removeSubclass in interface VClassDao

removeSubclass

public void removeSubclass(String vclassURI,
                           String subclassURI)

Specified by:

removeSubclass in interface VClassDao

addEquivalentClass

public void addEquivalentClass(String classURI,
                               String equivalentClassURI)

Specified by:

addEquivalentClass in interface VClassDao

removeEquivalentClass

public void removeEquivalentClass(String classURI,
                                  String equivalentClassURI)

Specified by:

removeEquivalentClass in interface VClassDao

getAllSubClassURIs

public List<String> getAllSubClassURIs(String classURI)

Specified by:

getAllSubClassURIs in interface VClassDao

getAllSubClassURIs

public void getAllSubClassURIs(String classURI,
                               HashSet<String> subtree)

getAllSuperClassURIs

public List<String> getAllSuperClassURIs(String classURI)

Specified by:

getAllSuperClassURIs in interface VClassDao

getAllSuperClassURIs

public void getAllSuperClassURIs(String classURI,
                                 HashSet<String> subtree)

getAllVclasses

public List<VClass> getAllVclasses()

Specified by:

getAllVclasses in interface VClassDao

getRootClasses

public List<VClass> getRootClasses()

Specified by:

getRootClasses in interface VClassDao

getOntologyRootClasses

public List<VClass> getOntologyRootClasses(String ontologyURI)

Specified by:

getOntologyRootClasses in interface VClassDao

getSubClassURIs

public List<String> getSubClassURIs(String classURI)

Specified by:

getSubClassURIs in interface VClassDao

getSuperClassURIs

public List<String> getSuperClassURIs(String classURI,
                                      boolean direct)

Specified by:

getSuperClassURIs in interface VClassDao

getTopConcept

public VClass getTopConcept()

Description copied from interface: VClassDao

Returns the top concept for the current modeling language (e.g. owl:Thing)

Specified by:

getTopConcept in interface VClassDao

getBottomConcept

public VClass getBottomConcept()

Description copied from interface: VClassDao

Returns the bottom concept for the current modeling language (e.g. owl:Nothing)

Specified by:

getBottomConcept in interface VClassDao

getVClassByURI

public VClass getVClassByURI(String URIStr)

Specified by:

getVClassByURI in interface VClassDao

insertNewVClass

public void insertNewVClass(VClass cls)
                     throws InsertException

Specified by:

insertNewVClass in interface VClassDao

Throws:

InsertException

getVClassesForProperty

public List<VClass> getVClassesForProperty(String propertyURI,
                                           boolean domainSide)

Specified by:

getVClassesForProperty in interface VClassDao

getVClassesForProperty

public List<VClass> getVClassesForProperty(String vclassURI,
                                           String propertyURI)

Specified by:

getVClassesForProperty in interface VClassDao

addVClassesToGroup

public void addVClassesToGroup(VClassGroup group)

Specified by:

addVClassesToGroup in interface VClassDao

addVClassesToGroup

@Deprecated
public void addVClassesToGroup(VClassGroup group,
                               boolean includeUninstantiatedClasses)

Deprecated.

Specified by:

addVClassesToGroup in interface VClassDao

addVClassesToGroup

@Deprecated
public void addVClassesToGroup(VClassGroup group,
                               boolean includeUninstantiatedClasses,
                               boolean getIndividualCount)

Deprecated.

Specified by:

addVClassesToGroup in interface VClassDao

addVClassesToGroups

public void addVClassesToGroups(List<VClassGroup> groups)

Specified by:

addVClassesToGroups in interface VClassDao

insertNewVClass

public int insertNewVClass(VClass cls,
                           org.apache.jena.ontology.OntModel ontModel)
                    throws InsertException

Throws:

InsertException

updateVClass

public void updateVClass(VClass cls)

Specified by:

updateVClass in interface VClassDao

updateVClass

public void updateVClass(VClass cls,
                         org.apache.jena.ontology.OntModel ontModel)

deleteClasses2Classes

public void deleteClasses2Classes(Classes2Classes c2c)

Specified by:

deleteClasses2Classes in interface VClassDao

deleteClasses2Classes

public void deleteClasses2Classes(Classes2Classes c2c,
                                  org.apache.jena.ontology.OntModel ontModel)

insertNewClasses2Classes

public void insertNewClasses2Classes(Classes2Classes c2c)

Specified by:

insertNewClasses2Classes in interface VClassDao

insertNewClasses2Classes

public void insertNewClasses2Classes(Classes2Classes c2c,
                                     org.apache.jena.ontology.OntModel ontModel)

isSubClassOf

public boolean isSubClassOf(VClass vc1,
                            VClass vc2)

Specified by:

isSubClassOf in interface VClassDao

Parameters:

vc1 - VCLass

vc2 - VClass

Returns:

true if vc1 subClassOf vc2

isSubClassOf

public boolean isSubClassOf(String vclassURI1,
                            String vclassURI2)

Specified by:

isSubClassOf in interface VClassDao

Parameters:

vclassURI1 - VClass URI

vclassURI2 - VClass URI

Returns:

true if vc1 subClassOf vc2