Index (VIVO API 1.13.0 API)

A B C D E F G H I J K L M N O P Q R S T U V W Y

A

AboutQrCodesController - Class in edu.cornell.mannlib.vitro.webapp.controller
AboutQrCodesController() - Constructor for class edu.cornell.mannlib.vitro.webapp.controller.AboutQrCodesController
abstractText - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
abstractText - Variable in class org.vivoweb.webapp.createandlink.crossref.CrossrefCiteprocJSONModel
abstractText - Variable in class org.vivoweb.webapp.createandlink.ResourceModel
ACADEMIC_FACULTY_EMPLOYEE_URL - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.constants.QueryFieldLabels
ACADEMIC_STAFF_EMPLOYEE_URL - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.constants.QueryFieldLabels
accessed - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
Activity - Class in edu.cornell.mannlib.vitro.webapp.visualization.valueobjects: This interface will make sure that VOs conveying any person's academic output like publications, grants etc implement certain methods which will be used to generalize methods which are just interested in certain common properties like what was the year in which the activity was published (or started).
Activity(String) - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Activity
addActivities(Collection<Activity>) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.SubEntity
addActivity(Activity) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Collaboration
addActivity(Activity) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Collaborator
addActivity(Activity) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.SubEntity
AddAssociatedConceptGenerator - Class in edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators: Generates the edit configuration for importing concepts from external search services, e.g.
AddAssociatedConceptGenerator() - Constructor for class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddAssociatedConceptGenerator
AddAssociatedConceptGenerator.AssociatedConceptInfo - Class in edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators
AddAssociatedConceptGenerator.AssociatedConceptInfoComparator - Class in edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators
AddAssociatedConceptsPreprocessor - Class in edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.preprocessors
AddAssociatedConceptsPreprocessor(EditConfigurationVTwo) - Constructor for class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.preprocessors.AddAssociatedConceptsPreprocessor
AddAttendeeRoleToPersonGenerator - Class in edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators
AddAttendeeRoleToPersonGenerator() - Constructor for class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddAttendeeRoleToPersonGenerator
AddAuthorsToInformationResourceGenerator - Class in edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators: This is a slightly unusual generator that is used by Manage Authors on information resources.
AddAuthorsToInformationResourceGenerator() - Constructor for class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddAuthorsToInformationResourceGenerator
AddAuthorsToInformationResourceGenerator.AuthorshipInfo - Class in edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators
AddClinicalRoleToPersonGenerator - Class in edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators
AddClinicalRoleToPersonGenerator() - Constructor for class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddClinicalRoleToPersonGenerator
AddConceptThroughObjectPropertyGenerator - Class in edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators: This generator is for the case where a new concept is being added for an object property other than research/subject areas where the default object property form generator would work instead of the generator for managing concepts.
AddConceptThroughObjectPropertyGenerator() - Constructor for class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddConceptThroughObjectPropertyGenerator
addContextNodeClass(String) - Method in class edu.cornell.mannlib.vitro.webapp.searchindex.extensions.LabelsAcrossContextNodes
addDateToResource(VitroRequest, Resource, ResourceModel.DateField) - Method in class org.vivoweb.webapp.controller.freemarker.CreateAndLinkResourceController: Add a date object to the resource
AddEditorRoleToPersonGenerator - Class in edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators: Generates the edit configuration for adding a Role to a Person.
AddEditorRoleToPersonGenerator() - Constructor for class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddEditorRoleToPersonGenerator
AddEditorshipToPersonGenerator - Class in edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators
AddEditorshipToPersonGenerator() - Constructor for class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddEditorshipToPersonGenerator
AddEditorsToInformationResourceGenerator - Class in edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators: This is a slightly unusual generator that is used by Manage Editors on information resources.
AddEditorsToInformationResourceGenerator() - Constructor for class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddEditorsToInformationResourceGenerator
AddEditorsToInformationResourceGenerator.EditorshipInfo - Class in edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators
AddEditWebpageFormGenerator - Class in edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators: Custom form for adding or editing a webpage associated with an individual.
AddEditWebpageFormGenerator() - Constructor for class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddEditWebpageFormGenerator
addEntityTypeLabel(String) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.SubEntity
addEntry(String, String) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.GenericQueryMap
addFormSpecificData(EditConfigurationVTwo, VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddAssociatedConceptGenerator
addFormSpecificData(EditConfigurationVTwo, VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddAuthorsToInformationResourceGenerator
addFormSpecificData(EditConfigurationVTwo, VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddEditorshipToPersonGenerator
addFormSpecificData(EditConfigurationVTwo, VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddEditorsToInformationResourceGenerator
addFormSpecificData(EditConfigurationVTwo, VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddGrantRoleToPersonGenerator
addFormSpecificData(EditConfigurationVTwo, VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddPublicationToPersonGenerator
addFormSpecificData(EditConfigurationVTwo, VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddRoleToPersonTwoStageGenerator
addFormSpecificData(EditConfigurationVTwo, VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddUserDefinedConceptGenerator
addFormSpecificData(EditConfigurationVTwo, VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AutocompleteDataPropertyFormGenerator
addFormSpecificData(EditConfigurationVTwo, VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.GrantHasContributorGenerator
addFormSpecificData(EditConfigurationVTwo, VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.OrganizationForTrainingGenerator
addFormSpecificData(EditConfigurationVTwo, VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.PersonHasAdviseeRelationshipGenerator
addFormSpecificData(EditConfigurationVTwo, VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.PersonHasAdvisorRelationshipGenerator
addFormSpecificData(EditConfigurationVTwo, VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.PersonHasEducationalTraining
addFormSpecificData(EditConfigurationVTwo, VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.PersonHasIssuedCredentialGenerator
addFormSpecificData(EditConfigurationVTwo, VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.PersonHasPositionHistoryGenerator
addFormSpecificData(EditConfigurationVTwo, VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.ProjectHasParticipantGenerator
addFormSpecificData(EditConfigurationVTwo, VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.VIVODefaultAddMissingIndividualFormGenerator
addFormSpecificData(EditConfigurationVTwo, VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.VIVONewIndividualFormGenerator
AddFullNameToPersonGenerator - Class in edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators
AddFullNameToPersonGenerator() - Constructor for class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddFullNameToPersonGenerator
AddGrantRoleToPersonGenerator - Class in edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators: Custom form for adding a grant to an person for the predicates hasCo-PrincipalInvestigatorRole and hasPrincipalInvestigatorRole.
AddGrantRoleToPersonGenerator() - Constructor for class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddGrantRoleToPersonGenerator
AddGrantRoleToPersonGenerator.RoleActivityOptionTypes - Enum in edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators
AddHeadOfRoleToPersonGenerator - Class in edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators
AddHeadOfRoleToPersonGenerator() - Constructor for class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddHeadOfRoleToPersonGenerator
AddMemberRoleToPersonGenerator - Class in edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators
AddMemberRoleToPersonGenerator() - Constructor for class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddMemberRoleToPersonGenerator
addOptions(VitroRequest, Map<String, Object>) - Method in class edu.cornell.mannlib.vitro.webapp.controller.individual.VIVOIndividualResponseBuilderExtension
AddOrcidIdToPersonGenerator - Class in edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators
AddOrcidIdToPersonGenerator() - Constructor for class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddOrcidIdToPersonGenerator
AddOrganizerRoleToPersonGenerator - Class in edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators
AddOrganizerRoleToPersonGenerator() - Constructor for class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddOrganizerRoleToPersonGenerator
AddOutreachProviderRoleToPersonGenerator - Class in edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators
AddOutreachProviderRoleToPersonGenerator() - Constructor for class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddOutreachProviderRoleToPersonGenerator
addParents(Collection<Individual>) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Entity
AddPresenterRoleToPersonGenerator - Class in edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators
AddPresenterRoleToPersonGenerator() - Constructor for class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddPresenterRoleToPersonGenerator
AddPublicationToPersonGenerator - Class in edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators: On an add/new, this will show a form, on an edit/update this will skip to the profile page of the publication.
AddPublicationToPersonGenerator() - Constructor for class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddPublicationToPersonGenerator
AddResearcherRoleToPersonGenerator - Class in edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators
AddResearcherRoleToPersonGenerator() - Constructor for class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddResearcherRoleToPersonGenerator
AddReviewerRoleToPersonGenerator - Class in edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators
AddReviewerRoleToPersonGenerator() - Constructor for class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddReviewerRoleToPersonGenerator
AddRoleToPersonTwoStageGenerator - Class in edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators: Generates the edit configuration for adding a Role to a Person.
AddRoleToPersonTwoStageGenerator() - Constructor for class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddRoleToPersonTwoStageGenerator
AddRoleToPersonTwoStageGenerator.RoleActivityOptionTypes - Enum in edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators
AddServiceProviderRoleToPersonGenerator - Class in edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators
AddServiceProviderRoleToPersonGenerator() - Constructor for class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddServiceProviderRoleToPersonGenerator
addSubEntitities(Collection<SubEntity>) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Entity
addSubEntity(SubEntity) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Entity
addSubEntity(String, String, String, int) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.json.MapOfScience
AddTeacherRoleToPersonGenerator - Class in edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators
AddTeacherRoleToPersonGenerator() - Constructor for class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddTeacherRoleToPersonGenerator
addTypeRestriction(String) - Method in class edu.cornell.mannlib.vitro.webapp.searchindex.extensions.LabelsAcrossContextNodes
AddUserDefinedConceptGenerator - Class in edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators: Generates the edit configuration for importing concepts from external search services, e.g.
AddUserDefinedConceptGenerator() - Constructor for class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddUserDefinedConceptGenerator
AdvisingRelationshipChecker - Class in edu.cornell.mannlib.vivo.auth.policy: Does the requested action involve a change to an Advising Relationship that the self-editor is authorized to modify?
AdvisingRelationshipChecker(AbstractPropertyStatementAction) - Constructor for class edu.cornell.mannlib.vivo.auth.policy.AdvisingRelationshipChecker
Affinity() - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.utilities.CachingRDFServiceExecutor.Affinity
AgrovocService - Class in edu.cornell.mannlib.semservices.service.impl
AgrovocService() - Constructor for class edu.cornell.mannlib.semservices.service.impl.AgrovocService
AJAX_VISUALIZATION_SERVICE_URL_PREFIX - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants
AjaxVisualizationController - Class in edu.cornell.mannlib.vitro.webapp.controller.visualization: Services a visualization request.
AjaxVisualizationController() - Constructor for class edu.cornell.mannlib.vitro.webapp.controller.visualization.AjaxVisualizationController
allExternalIDsForFind(String) - Method in interface org.vivoweb.webapp.createandlink.CreateAndLinkResourceProvider
allExternalIDsForFind(String) - Method in class org.vivoweb.webapp.createandlink.crossref.CrossrefCreateAndLinkResourceProvider: Resolve the DOI into other external identifiers
allExternalIDsForFind(String) - Method in class org.vivoweb.webapp.createandlink.pubmed.PubMedCreateAndLinkResourceProvider
AllPropertiesQueryRunner - Class in edu.cornell.mannlib.vitro.webapp.visualization.visutils: This query runner is used to execute a sparql query that will fetch all the properties available for the provided individual URI.
AllPropertiesQueryRunner(String, String, RDFService, Log) - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.visutils.AllPropertiesQueryRunner
alreadyClaimed - Variable in class org.vivoweb.webapp.createandlink.Citation
annote - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
archive - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
archive_location - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
ARE_GRANTS_AVAILABLE_UTILS_VIS_MODE - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants
ARE_PUBLICATIONS_AVAILABLE_UTILS_VIS_MODE - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants
articleNumber - Variable in class org.vivoweb.webapp.createandlink.crossref.CrossrefCiteprocJSONModel
AssociatedConceptInfo(String, String, String, String, String, String, String) - Constructor for class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddAssociatedConceptGenerator.AssociatedConceptInfo
AssociatedConceptInfoComparator() - Constructor for class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddAssociatedConceptGenerator.AssociatedConceptInfoComparator
auth - Variable in class edu.cornell.mannlib.vivo.orcid.controller.OrcidAbstractHandler
author - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
author - Variable in class org.vivoweb.webapp.createandlink.crossref.CrossrefCiteprocJSONModel
author - Variable in class org.vivoweb.webapp.createandlink.ResourceModel
AUTHOR_LABEL - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.constants.QueryFieldLabels
AUTHOR_URL - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.constants.QueryFieldLabels
authority - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
authors - Variable in class org.vivoweb.webapp.createandlink.Citation
AuthorshipInfo(String, String, String, String) - Constructor for class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddAuthorsToInformationResourceGenerator.AuthorshipInfo
AutocompleteDataPropertyFormGenerator - Class in edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators: Generates the edit configuration for a default property form.
AutocompleteDataPropertyFormGenerator() - Constructor for class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AutocompleteDataPropertyFormGenerator
AutocompleteRequiredInputValidator - Class in edu.cornell.mannlib.vitro.webapp.edit.n3editing
AutocompleteRequiredInputValidator(String, String) - Constructor for class edu.cornell.mannlib.vitro.webapp.edit.n3editing.AutocompleteRequiredInputValidator

B

BIBO_ABSTRACT - Static variable in class org.vivoweb.webapp.controller.freemarker.CreateAndLinkResourceController: URIs of types and predicates in the VIVO ontology that we need for creating resources
BIBO_ARTICLE - Static variable in class org.vivoweb.webapp.controller.freemarker.CreateAndLinkResourceController
BIBO_BOOK - Static variable in class org.vivoweb.webapp.controller.freemarker.CreateAndLinkResourceController
BIBO_DOI - Static variable in class org.vivoweb.webapp.controller.freemarker.CreateAndLinkResourceController
BIBO_ISBN10 - Static variable in class org.vivoweb.webapp.controller.freemarker.CreateAndLinkResourceController
BIBO_ISBN13 - Static variable in class org.vivoweb.webapp.controller.freemarker.CreateAndLinkResourceController
BIBO_ISSN - Static variable in class org.vivoweb.webapp.controller.freemarker.CreateAndLinkResourceController
BIBO_ISSUE - Static variable in class org.vivoweb.webapp.controller.freemarker.CreateAndLinkResourceController
BIBO_JOURNAL - Static variable in class org.vivoweb.webapp.controller.freemarker.CreateAndLinkResourceController
BIBO_PAGE_COUNT - Static variable in class org.vivoweb.webapp.controller.freemarker.CreateAndLinkResourceController
BIBO_PAGE_END - Static variable in class org.vivoweb.webapp.controller.freemarker.CreateAndLinkResourceController
BIBO_PAGE_START - Static variable in class org.vivoweb.webapp.controller.freemarker.CreateAndLinkResourceController
BIBO_PMID - Static variable in class org.vivoweb.webapp.controller.freemarker.CreateAndLinkResourceController
BIBO_VOLUME - Static variable in class org.vivoweb.webapp.controller.freemarker.CreateAndLinkResourceController
build(RDFService) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.utilities.CachingRDFServiceExecutor: (Re)build the current cache
build(Individual, VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.web.templatemodels.individual.VIVOIndividualTemplateModelBuilder
build(Individual, VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.web.templatemodels.individuallist.VIVOListedIndividualBuilder
buildMissing() - Static method in class edu.cornell.mannlib.vitro.webapp.visualization.utilities.VisualizationCaches
buildResourceAndLabelFieldOptions(RDFService, WebappDaoFactory, String, String, String...) - Static method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.GeneratorUtil: Build a field options list of resource URIs paired with their labels as retrieved from the supplied RDFService.

C

CachedModelConstructor - Interface in edu.cornell.mannlib.vitro.webapp.visualization.visutils
cachedWhen() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.utilities.CachingRDFServiceExecutor
CachingRDFServiceExecutor<T> - Class in edu.cornell.mannlib.vitro.webapp.visualization.utilities: Utility class that populates and returns a cache.
CachingRDFServiceExecutor(CachingRDFServiceExecutor.RDFServiceCallable<T>) - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.utilities.CachingRDFServiceExecutor
CachingRDFServiceExecutor.Affinity - Class in edu.cornell.mannlib.vitro.webapp.visualization.utilities: Affinity class that serializes background processing for tasks given the same affinity
CachingRDFServiceExecutor.RDFServiceCallable<T> - Class in edu.cornell.mannlib.vitro.webapp.visualization.utilities: Class to be implemented by user to provide the means of generating the results
calculateBeta(String) - Method in class edu.cornell.mannlib.vitro.webapp.searchindex.documentBuilding.CalculateParameters
CalculateParameters - Class in edu.cornell.mannlib.vitro.webapp.searchindex.documentBuilding
CalculateParameters() - Constructor for class edu.cornell.mannlib.vitro.webapp.searchindex.documentBuilding.CalculateParameters
call() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.utilities.CachingRDFServiceExecutor.RDFServiceCallable: Entry point for the background threads, ensuring the right start / cleanup is done
callNumber - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
callWithService(RDFService) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.utilities.CachingRDFServiceExecutor.RDFServiceCallable: Method for users to implement, to return the results
CapabilityMapRequestHandler - Class in edu.cornell.mannlib.vitro.webapp.visualization.capabilitymap
CapabilityMapRequestHandler() - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.capabilitymap.CapabilityMapRequestHandler
categories - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
chapterNumber - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
circa - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel.DateField
Citation - Class in org.vivoweb.webapp.createandlink
Citation() - Constructor for class org.vivoweb.webapp.createandlink.Citation
Citation.Name - Class in org.vivoweb.webapp.createandlink
citationLabel - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
citationNumber - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
CiteprocJSONModel - Class in org.vivoweb.webapp.createandlink
CiteprocJSONModel() - Constructor for class org.vivoweb.webapp.createandlink.CiteprocJSONModel
CiteprocJSONModel.DateField - Class in org.vivoweb.webapp.createandlink
CiteprocJSONModel.NameField - Class in org.vivoweb.webapp.createandlink
CO_AUTHOR_LABEL - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.constants.QueryFieldLabels
CO_AUTHOR_URL - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.constants.QueryFieldLabels
CO_PI_LABEL - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.constants.QueryFieldLabels
CO_PI_URL - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.constants.QueryFieldLabels
CO_PI_VIS - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants
COAUTHOR_NETWORK_DOWNLOAD_VIS_MODE - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants
COAUTHOR_NETWORK_STREAM_VIS_MODE - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants
COAUTHOR_UTILS_VIS_MODE - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants
COAUTHOR_VIS_MODE - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants
COAUTHORS_COUNT_PER_YEAR_VIS_MODE - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants
COAUTHORS_LIST_VIS_MODE - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants
COAUTHORSHIP_VIS - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants
COAUTHORSHIP_VIS_SHORT_URL - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants
CoAuthorshipData - Class in edu.cornell.mannlib.vitro.webapp.visualization.collaborationutils
CoAuthorshipData(Collaborator, Set<Collaborator>, Set<Collaboration>, Map<String, Activity>) - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.collaborationutils.CoAuthorshipData
CoAuthorshipGraphMLWriter - Class in edu.cornell.mannlib.vitro.webapp.visualization.coauthorship
CoAuthorshipGraphMLWriter(CollaborationData) - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.coauthorship.CoAuthorshipGraphMLWriter
CoAuthorshipQueryRunner - Class in edu.cornell.mannlib.vitro.webapp.visualization.coauthorship: This query runner is used to execute a sparql query to get all the publications for a particular individual.
CoAuthorshipQueryRunner(String, VitroRequest, Log) - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.coauthorship.CoAuthorshipQueryRunner
CoAuthorshipRequestHandler - Class in edu.cornell.mannlib.vitro.webapp.visualization.coauthorship: This request handler is used when information related to co-authorship network for an individual is requested.
CoAuthorshipRequestHandler() - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.coauthorship.CoAuthorshipRequestHandler
CoAuthorshipVisCodeGenerator - Class in edu.cornell.mannlib.vitro.webapp.visualization.coauthorship
CoAuthorshipVisCodeGenerator(String, String, String, Map<String, Set<Collaborator>>, Log) - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.coauthorship.CoAuthorshipVisCodeGenerator
coAuthorVisUrl() - Method in class edu.cornell.mannlib.vitro.webapp.web.templatemodels.individual.VIVOIndividualTemplateModel
CoInvestigationData - Class in edu.cornell.mannlib.vitro.webapp.visualization.collaborationutils
CoInvestigationData(Collaborator, Set<Collaborator>, Set<Collaboration>, Map<String, Activity>) - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.collaborationutils.CoInvestigationData
COINVESTIGATOR_VIS_SHORT_URL - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants
coInvestigatorVisUrl() - Method in class edu.cornell.mannlib.vitro.webapp.web.templatemodels.individual.VIVOIndividualTemplateModel
Collaboration - Class in edu.cornell.mannlib.vitro.webapp.visualization.valueobjects: This is stores collaboration information mainly for ego-centric visualizations.
Collaboration(Collaborator, Collaborator, Activity, UniqueIDGenerator) - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Collaboration
CollaborationComparator - Class in edu.cornell.mannlib.vitro.webapp.visualization.collaborationutils: This Comparator is used to sort the edges based on their IDs in ascending order.
CollaborationComparator() - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.collaborationutils.CollaborationComparator
CollaborationData - Class in edu.cornell.mannlib.vitro.webapp.visualization.collaborationutils
CollaborationData(Collaborator, Set<Collaborator>, Set<Collaboration>) - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.collaborationutils.CollaborationData
CollaborationDataViewHelper - Class in edu.cornell.mannlib.vitro.webapp.visualization.visutils
CollaborationDataViewHelper(CollaborationData) - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.visutils.CollaborationDataViewHelper
Collaborator - Class in edu.cornell.mannlib.vitro.webapp.visualization.valueobjects: This stores collbaorator's information involved in ego-centric networks & represents a collaborator's activities.
Collaborator(String, UniqueIDGenerator) - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Collaborator
CollaboratorComparator - Class in edu.cornell.mannlib.vitro.webapp.visualization.collaborationutils: This Comparator is used to sort the nodes based on their IDs in ascending order.
CollaboratorComparator() - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.collaborationutils.CollaboratorComparator
collectionEditor - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
collectionNumber - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
COLLEGE_LABEL - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.constants.QueryFieldLabels
COLLEGE_PUBLICATION_COUNT_VIS - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants
COLLEGE_URL - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.constants.QueryFieldLabels
commaSuffix - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel.NameField
compare(AddAssociatedConceptGenerator.AssociatedConceptInfo, AddAssociatedConceptGenerator.AssociatedConceptInfo) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddAssociatedConceptGenerator.AssociatedConceptInfoComparator
compare(ManageLabelsForPersonGenerator.LabelInformation, ManageLabelsForPersonGenerator.LabelInformation) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.ManageLabelsForPersonGenerator.LabelInformationComparator
compare(Collaboration, Collaboration) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.collaborationutils.CollaborationComparator
compare(Collaborator, Collaborator) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.collaborationutils.CollaboratorComparator
composer - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
ConceptLabelMap - Class in edu.cornell.mannlib.vitro.webapp.visualization.model
ConceptLabelMap() - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.model.ConceptLabelMap
ConceptPeopleMap - Class in edu.cornell.mannlib.vitro.webapp.visualization.model
ConceptPeopleMap() - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.model.ConceptPeopleMap
ConceptSearchServiceUtils - Class in edu.cornell.mannlib.vitro.webapp.utils.ConceptSearchService: Utilities for search
ConceptSearchServiceUtils() - Constructor for class edu.cornell.mannlib.vitro.webapp.utils.ConceptSearchService.ConceptSearchServiceUtils
ConceptSearchServlet - Class in edu.cornell.mannlib.vitro.webapp.servlet
ConceptSearchServlet() - Constructor for class edu.cornell.mannlib.vitro.webapp.servlet.ConceptSearchServlet
ConceptSemanticTypesPreprocessor - Class in edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.preprocessors
ConceptSemanticTypesPreprocessor() - Constructor for class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.preprocessors.ConceptSemanticTypesPreprocessor
conceptSkosMosBase - Variable in class edu.cornell.mannlib.semservices.service.impl.AgrovocService
conceptSkosMosURL - Variable in class edu.cornell.mannlib.semservices.service.impl.AgrovocService
conceptsSkosMosSearch - Variable in class edu.cornell.mannlib.semservices.service.impl.AgrovocService
conceptSubclass() - Method in class edu.cornell.mannlib.vitro.webapp.web.templatemodels.individual.VIVOIndividualTemplateModel
conceptToLabel - Variable in class edu.cornell.mannlib.vitro.webapp.visualization.model.ConceptLabelMap
conceptToLabel - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.utilities.VisualizationCaches: Concept to label
conceptToPeople - Variable in class edu.cornell.mannlib.vitro.webapp.visualization.model.ConceptPeopleMap
conceptToPeopleMap - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.utilities.VisualizationCaches: Map of people associated with a concept
configurationFileExists() - Static method in class edu.cornell.mannlib.semservices.service.impl.UMLSService
ConstructedModel - Class in edu.cornell.mannlib.vitro.webapp.visualization.valueobjects
ConstructedModel(String, String) - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.ConstructedModel
ConstructedModelTracker - Class in edu.cornell.mannlib.vitro.webapp.visualization.valueobjects
ConstructedModelTracker() - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.ConstructedModelTracker
container - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
container - Variable in class org.vivoweb.webapp.createandlink.crossref.CrossrefCiteprocJSONModel
containerAuthor - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
containerTitle - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
containerTitle - Variable in class org.vivoweb.webapp.createandlink.crossref.CrossrefCiteprocJSONModel
containerTitle - Variable in class org.vivoweb.webapp.createandlink.ResourceModel
containerTitleShort - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
contextDestroyed(ServletContextEvent) - Method in class edu.cornell.mannlib.vitro.webapp.controller.individual.VIVOIndividualResponseBuilderExtension.Setup
contextDestroyed(ServletContextEvent) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.setup.VisualizationSetup
contextDestroyed(ServletContextEvent) - Method in class edu.cornell.mannlib.vivo.auth.policy.SelfEditorRelationshipPolicy.Setup
contextDestroyed(ServletContextEvent) - Method in class edu.cornell.mannlib.vivo.orcid.OrcidContextSetup
contextDestroyed(ServletContextEvent) - Method in class org.vivoweb.webapp.startup.DataGetterN3Setup
contextDestroyed(ServletContextEvent) - Method in class org.vivoweb.webapp.startup.GeneratorSetup
contextDestroyed(ServletContextEvent) - Method in class org.vivoweb.webapp.startup.i18nSetup
contextDestroyed(ServletContextEvent) - Method in class org.vivoweb.webapp.startup.JSONWrapperSetup
contextDestroyed(ServletContextEvent) - Method in class org.vivoweb.webapp.startup.MenuManagementSetup
contextDestroyed(ServletContextEvent) - Method in class org.vivoweb.webapp.startup.SearchResultTemplateModelSetup
contextDestroyed(ServletContextEvent) - Method in class org.vivoweb.webapp.startup.SiteAdminSetup
contextDestroyed(ServletContextEvent) - Method in class org.vivoweb.webapp.startup.TemplateModelSetup
contextInitialized(ServletContextEvent) - Method in class edu.cornell.mannlib.vitro.webapp.controller.individual.VIVOIndividualResponseBuilderExtension.Setup
contextInitialized(ServletContextEvent) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.setup.VisualizationSetup
contextInitialized(ServletContextEvent) - Method in class edu.cornell.mannlib.vivo.auth.policy.SelfEditorRelationshipPolicy.Setup
contextInitialized(ServletContextEvent) - Method in class edu.cornell.mannlib.vivo.orcid.OrcidContextSetup
contextInitialized(ServletContextEvent) - Method in class org.vivoweb.webapp.startup.DataGetterN3Setup
contextInitialized(ServletContextEvent) - Method in class org.vivoweb.webapp.startup.GeneratorSetup
contextInitialized(ServletContextEvent) - Method in class org.vivoweb.webapp.startup.i18nSetup
contextInitialized(ServletContextEvent) - Method in class org.vivoweb.webapp.startup.JSONWrapperSetup
contextInitialized(ServletContextEvent) - Method in class org.vivoweb.webapp.startup.MenuManagementSetup
contextInitialized(ServletContextEvent) - Method in class org.vivoweb.webapp.startup.SearchResultTemplateModelSetup
contextInitialized(ServletContextEvent) - Method in class org.vivoweb.webapp.startup.SiteAdminSetup
contextInitialized(ServletContextEvent) - Method in class org.vivoweb.webapp.startup.TemplateModelSetup
ContributorRole - Class in org.vivoweb.webapp.createandlink
ContributorRole(String, String, String) - Constructor for class org.vivoweb.webapp.createandlink.ContributorRole
COPI_NETWORK_DOWNLOAD_VIS_MODE - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants
COPI_NETWORK_STREAM_VIS_MODE - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants
COPI_UTILS_VIS_MODE - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants
COPI_VIS_MODE - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants
CoPIGrantCountConstructQueryRunner - Class in edu.cornell.mannlib.vitro.webapp.visualization.coprincipalinvestigator
CoPIGrantCountConstructQueryRunner(String, RDFService, Log) - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.coprincipalinvestigator.CoPIGrantCountConstructQueryRunner
CoPIGrantCountQueryRunner - Class in edu.cornell.mannlib.vitro.webapp.visualization.coprincipalinvestigator
CoPIGrantCountQueryRunner(String, VitroRequest, Log) - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.coprincipalinvestigator.CoPIGrantCountQueryRunner
CoPIGrantCountRequestHandler - Class in edu.cornell.mannlib.vitro.webapp.visualization.coprincipalinvestigator
CoPIGrantCountRequestHandler() - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.coprincipalinvestigator.CoPIGrantCountRequestHandler
CoPIGraphMLWriter - Class in edu.cornell.mannlib.vitro.webapp.visualization.coprincipalinvestigator
CoPIGraphMLWriter(CollaborationData) - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.coprincipalinvestigator.CoPIGraphMLWriter
COPIS_COUNT_PER_YEAR_VIS_MODE - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants
COPIS_LIST_VIS_MODE - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants
CoPIVisCodeGenerator - Class in edu.cornell.mannlib.vitro.webapp.visualization.coprincipalinvestigator: This class contains code for rendering sparklines and displaying tables for Co-PI visualization.
CoPIVisCodeGenerator(String, String, String, Map<String, Set<Collaborator>>, Log) - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.coprincipalinvestigator.CoPIVisCodeGenerator
cornellNetId() - Method in class edu.cornell.mannlib.vivo.orcid.controller.OrcidAbstractHandler
CounterUtils - Class in edu.cornell.mannlib.vitro.webapp.visualization.utilities
CounterUtils() - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.utilities.CounterUtils
CourseChecker - Class in edu.cornell.mannlib.vivo.auth.policy: Does the requested action involve a change to a Course that the self-editor is authorized to modify?
CourseChecker(AbstractPropertyStatementAction) - Constructor for class edu.cornell.mannlib.vivo.auth.policy.CourseChecker
CreateAndLinkResourceController - Class in org.vivoweb.webapp.controller.freemarker: Main controller class for claiming (creating and/or linking) resources to a profile
CreateAndLinkResourceController() - Constructor for class org.vivoweb.webapp.controller.freemarker.CreateAndLinkResourceController
CreateAndLinkResourceController.PublicationType - Class in org.vivoweb.webapp.controller.freemarker
CreateAndLinkResourceProvider - Interface in org.vivoweb.webapp.createandlink
CreateAndLinkUtils - Class in org.vivoweb.webapp.createandlink
CreateAndLinkUtils() - Constructor for class org.vivoweb.webapp.createandlink.CreateAndLinkUtils
createConcept(String, String) - Method in class edu.cornell.mannlib.semservices.service.impl.AgrovocService
createConcept(String, String, String) - Method in class edu.cornell.mannlib.semservices.service.impl.LCSHService
created - Variable in class org.vivoweb.webapp.createandlink.crossref.CrossrefCiteprocJSONModel
createVIVOObject(VitroRequest, Model, ResourceModel, String) - Method in class org.vivoweb.webapp.controller.freemarker.CreateAndLinkResourceController: Create a new resource in VIVO, based on the values of the intermediate model
CrossrefCiteprocJSONModel - Class in org.vivoweb.webapp.createandlink.crossref: Note that ISSN and ISBN are arrays in Crossref, whereas Citeproc defines them to be a single value.
CrossrefCiteprocJSONModel() - Constructor for class org.vivoweb.webapp.createandlink.crossref.CrossrefCiteprocJSONModel
CrossrefCiteprocJSONModel.DateField - Class in org.vivoweb.webapp.createandlink.crossref
CrossrefCiteprocJSONModel.NameField - Class in org.vivoweb.webapp.createandlink.crossref
CrossrefCreateAndLinkResourceProvider - Class in org.vivoweb.webapp.createandlink.crossref: Provider for looking up DOIs in CrossRef
CrossrefCreateAndLinkResourceProvider() - Constructor for class org.vivoweb.webapp.createandlink.crossref.CrossrefCreateAndLinkResourceProvider
CrossrefNativeAPI - Class in org.vivoweb.webapp.createandlink.crossref: Interface to CrossRef's native API
CrossrefNativeAPI() - Constructor for class org.vivoweb.webapp.createandlink.crossref.CrossrefNativeAPI
CrossrefResolverAPI - Class in org.vivoweb.webapp.createandlink.crossref: Interface to the CrossRef resolver
CrossrefResolverAPI() - Constructor for class org.vivoweb.webapp.createandlink.crossref.CrossrefResolverAPI
CSV_OUTPUT_FORMAT - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants
CumulativeCountRequestHandler - Class in edu.cornell.mannlib.vitro.webapp.visualization.personpubcount
CumulativeCountRequestHandler() - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.personpubcount.CumulativeCountRequestHandler
CURRENT_YEAR - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.constants.VOConstants
currentUser - Variable in class edu.cornell.mannlib.vivo.orcid.controller.OrcidAbstractHandler
CustomLock - Class in edu.cornell.mannlib.vitro.webapp.visualization.visutils
CustomLock() - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.visutils.CustomLock

D

DATA_RENDER_MODE - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants
DATA_VISUALIZATION_SERVICE_URL_PREFIX - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants
DataGetterN3Setup - Class in org.vivoweb.webapp.startup
DataGetterN3Setup() - Constructor for class org.vivoweb.webapp.startup.DataGetterN3Setup
DataVisualizationController - Class in edu.cornell.mannlib.vitro.webapp.controller.visualization: Services a visualization request.
DataVisualizationController() - Constructor for class edu.cornell.mannlib.vitro.webapp.controller.visualization.DataVisualizationController
DateField() - Constructor for class org.vivoweb.webapp.createandlink.CiteprocJSONModel.DateField
DateField() - Constructor for class org.vivoweb.webapp.createandlink.crossref.CrossrefCiteprocJSONModel.DateField
DateField() - Constructor for class org.vivoweb.webapp.createandlink.ResourceModel.DateField
dateParts - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel.DateField
dateParts - Variable in class org.vivoweb.webapp.createandlink.crossref.CrossrefCiteprocJSONModel.DateField
dateTime - Variable in class org.vivoweb.webapp.createandlink.crossref.CrossrefCiteprocJSONModel.DateField
day - Variable in class org.vivoweb.webapp.createandlink.ResourceModel.DateField
dbpedia_endpoint - Variable in class edu.cornell.mannlib.semservices.service.impl.AgrovocService
DCCreatorForDocuments - Class in org.vivoweb.reasoner.plugin
DCCreatorForDocuments() - Constructor for class org.vivoweb.reasoner.plugin.DCCreatorForDocuments
DCTitleForDocuments - Class in org.vivoweb.reasoner.plugin
DCTitleForDocuments() - Constructor for class org.vivoweb.reasoner.plugin.DCTitleForDocuments
DEFAULT_ACTIVITY_YEAR - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.constants.VOConstants
DEFAULT_EXTERNAL_ID_COMMON_NAME - Static variable in class edu.cornell.mannlib.vivo.orcid.controller.OrcidIntegrationController
DEFAULT_GRANT_YEAR - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.constants.VOConstants
DEFAULT_PUBLICATION_YEAR - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.constants.VOConstants
DEPARTMENT_COMPARISON_VIS_MODE - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants
DEPARTMENT_LABEL - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.constants.QueryFieldLabels
DEPARTMENT_URL - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.constants.QueryFieldLabels
Describe - Class in edu.cornell.mannlib.vitro.webapp.utilities
Describe() - Constructor for class edu.cornell.mannlib.vitro.webapp.utilities.Describe
deserialize(JsonParser, DeserializationContext) - Method in class org.vivoweb.webapp.createandlink.utils.StringArrayDeserializer
dimensions - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
director - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
DISCIPLINE_ID_TO_LABEL - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.constants.MapOfScienceConstants
DISCIPLINE_TO_ACTIVTY_VIS_MODE - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants
doAddNew(VitroRequest, HttpSession) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddEditorshipToPersonGenerator
doAddNew(VitroRequest, HttpSession) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddPublicationToPersonGenerator
DOCUMENT_BLURB - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.constants.QueryFieldLabels
DOCUMENT_DESCRIPTION - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.constants.QueryFieldLabels
DOCUMENT_JOURNAL_LABEL - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.constants.QueryFieldLabels
DOCUMENT_LABEL - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.constants.QueryFieldLabels
DOCUMENT_MONIKER - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.constants.QueryFieldLabels
DOCUMENT_PUBLICATION_DATE - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.constants.QueryFieldLabels
DOCUMENT_PUBLICATION_YEAR - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.constants.QueryFieldLabels
DOCUMENT_PUBLICATION_YEAR_MONTH - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.constants.QueryFieldLabels
DOCUMENT_PUBLICATION_YEAR_USING_1_1_PROPERTY - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.constants.QueryFieldLabels
DOCUMENT_URL - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.constants.QueryFieldLabels
DocumentFieldNotFoundException - Exception in edu.cornell.mannlib.vitro.webapp.visualization.exceptions
DocumentFieldNotFoundException(String) - Constructor for exception edu.cornell.mannlib.vitro.webapp.visualization.exceptions.DocumentFieldNotFoundException
DocumentFieldNotFoundException(Exception) - Constructor for exception edu.cornell.mannlib.vitro.webapp.visualization.exceptions.DocumentFieldNotFoundException
doGet(HttpServletRequest, HttpServletResponse) - Method in class edu.cornell.mannlib.vitro.webapp.controller.visualization.AjaxVisualizationController
doGet(HttpServletRequest, HttpServletResponse) - Method in class edu.cornell.mannlib.vitro.webapp.controller.visualization.DataVisualizationController
doGet(HttpServletRequest, HttpServletResponse) - Method in class edu.cornell.mannlib.vitro.webapp.search.controller.FedSearchController
doGet(HttpServletRequest, HttpServletResponse) - Method in class edu.cornell.mannlib.vitro.webapp.servlet.ConceptSearchServlet
doGet(HttpServletRequest, HttpServletResponse) - Method in class edu.cornell.mannlib.vivo.orcid.controller.OrcidIntegrationController: Get in before FreemarkerHttpServlet for special handling.
doGet(HttpServletRequest, HttpServletResponse) - Method in class org.vivoweb.webapp.sitemap.SiteMapServlet
DOI - Variable in class org.vivoweb.webapp.createandlink.Citation
DOI - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
DOI - Variable in class org.vivoweb.webapp.createandlink.crossref.CrossrefCiteprocJSONModel
DOI - Variable in class org.vivoweb.webapp.createandlink.ExternalIdentifiers
DOI - Variable in class org.vivoweb.webapp.createandlink.ResourceModel
doPost(HttpServletRequest, HttpServletResponse) - Method in class edu.cornell.mannlib.vitro.webapp.controller.harvester.FileHarvestController
doPost(HttpServletRequest, HttpServletResponse) - Method in class edu.cornell.mannlib.vitro.webapp.servlet.ConceptSearchServlet
doRequest(VitroRequest, HttpServletResponse) - Method in class edu.cornell.mannlib.vitro.webapp.controller.ajax.HomePageAjaxController
doRequest(VitroRequest, HttpServletResponse) - Method in class edu.cornell.mannlib.vitro.webapp.controller.ajax.QrCodeAjaxController
droppingParticle - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel.NameField
DYNAMIC_RENDER_MODE - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants

E

edition - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
editor - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
editor - Variable in class org.vivoweb.webapp.createandlink.crossref.CrossrefCiteprocJSONModel
editor - Variable in class org.vivoweb.webapp.createandlink.ResourceModel
editorialDirector - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
EditorshipInfo(String, String, String, String) - Constructor for class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddEditorsToInformationResourceGenerator.EditorshipInfo
edu.cornell.mannlib.semservices.service.impl - package edu.cornell.mannlib.semservices.service.impl
edu.cornell.mannlib.vitro.webapp.controller - package edu.cornell.mannlib.vitro.webapp.controller
edu.cornell.mannlib.vitro.webapp.controller.ajax - package edu.cornell.mannlib.vitro.webapp.controller.ajax
edu.cornell.mannlib.vitro.webapp.controller.freemarker - package edu.cornell.mannlib.vitro.webapp.controller.freemarker
edu.cornell.mannlib.vitro.webapp.controller.harvester - package edu.cornell.mannlib.vitro.webapp.controller.harvester
edu.cornell.mannlib.vitro.webapp.controller.individual - package edu.cornell.mannlib.vitro.webapp.controller.individual
edu.cornell.mannlib.vitro.webapp.controller.visualization - package edu.cornell.mannlib.vitro.webapp.controller.visualization
edu.cornell.mannlib.vitro.webapp.edit.n3editing - package edu.cornell.mannlib.vitro.webapp.edit.n3editing
edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators - package edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators
edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.preprocessors - package edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.preprocessors
edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.preprocessors.utils - package edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.preprocessors.utils
edu.cornell.mannlib.vitro.webapp.search.controller - package edu.cornell.mannlib.vitro.webapp.search.controller
edu.cornell.mannlib.vitro.webapp.searchindex.documentBuilding - package edu.cornell.mannlib.vitro.webapp.searchindex.documentBuilding
edu.cornell.mannlib.vitro.webapp.searchindex.extensions - package edu.cornell.mannlib.vitro.webapp.searchindex.extensions
edu.cornell.mannlib.vitro.webapp.servlet - package edu.cornell.mannlib.vitro.webapp.servlet
edu.cornell.mannlib.vitro.webapp.utilities - package edu.cornell.mannlib.vitro.webapp.utilities
edu.cornell.mannlib.vitro.webapp.utils.ConceptSearchService - package edu.cornell.mannlib.vitro.webapp.utils.ConceptSearchService
edu.cornell.mannlib.vitro.webapp.utils.dataGetter - package edu.cornell.mannlib.vitro.webapp.utils.dataGetter
edu.cornell.mannlib.vitro.webapp.utils.menuManagement - package edu.cornell.mannlib.vitro.webapp.utils.menuManagement
edu.cornell.mannlib.vitro.webapp.visualization.capabilitymap - package edu.cornell.mannlib.vitro.webapp.visualization.capabilitymap
edu.cornell.mannlib.vitro.webapp.visualization.coauthorship - package edu.cornell.mannlib.vitro.webapp.visualization.coauthorship
edu.cornell.mannlib.vitro.webapp.visualization.collaborationutils - package edu.cornell.mannlib.vitro.webapp.visualization.collaborationutils
edu.cornell.mannlib.vitro.webapp.visualization.constants - package edu.cornell.mannlib.vitro.webapp.visualization.constants
edu.cornell.mannlib.vitro.webapp.visualization.coprincipalinvestigator - package edu.cornell.mannlib.vitro.webapp.visualization.coprincipalinvestigator
edu.cornell.mannlib.vitro.webapp.visualization.exceptions - package edu.cornell.mannlib.vitro.webapp.visualization.exceptions
edu.cornell.mannlib.vitro.webapp.visualization.mapofscience - package edu.cornell.mannlib.vitro.webapp.visualization.mapofscience
edu.cornell.mannlib.vitro.webapp.visualization.model - package edu.cornell.mannlib.vitro.webapp.visualization.model
edu.cornell.mannlib.vitro.webapp.visualization.modelconstructor - package edu.cornell.mannlib.vitro.webapp.visualization.modelconstructor
edu.cornell.mannlib.vitro.webapp.visualization.modelconstructor.factory - package edu.cornell.mannlib.vitro.webapp.visualization.modelconstructor.factory
edu.cornell.mannlib.vitro.webapp.visualization.persongrantcount - package edu.cornell.mannlib.vitro.webapp.visualization.persongrantcount
edu.cornell.mannlib.vitro.webapp.visualization.personlevel - package edu.cornell.mannlib.vitro.webapp.visualization.personlevel
edu.cornell.mannlib.vitro.webapp.visualization.personpubcount - package edu.cornell.mannlib.vitro.webapp.visualization.personpubcount
edu.cornell.mannlib.vitro.webapp.visualization.setup - package edu.cornell.mannlib.vitro.webapp.visualization.setup
edu.cornell.mannlib.vitro.webapp.visualization.temporalgraph - package edu.cornell.mannlib.vitro.webapp.visualization.temporalgraph
edu.cornell.mannlib.vitro.webapp.visualization.tools - package edu.cornell.mannlib.vitro.webapp.visualization.tools
edu.cornell.mannlib.vitro.webapp.visualization.utilities - package edu.cornell.mannlib.vitro.webapp.visualization.utilities
edu.cornell.mannlib.vitro.webapp.visualization.valueobjects - package edu.cornell.mannlib.vitro.webapp.visualization.valueobjects
edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.json - package edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.json
edu.cornell.mannlib.vitro.webapp.visualization.visutils - package edu.cornell.mannlib.vitro.webapp.visualization.visutils
edu.cornell.mannlib.vitro.webapp.web.templatemodels.individual - package edu.cornell.mannlib.vitro.webapp.web.templatemodels.individual
edu.cornell.mannlib.vitro.webapp.web.templatemodels.individuallist - package edu.cornell.mannlib.vitro.webapp.web.templatemodels.individuallist
edu.cornell.mannlib.vitro.webapp.web.templatemodels.searchresult - package edu.cornell.mannlib.vitro.webapp.web.templatemodels.searchresult
edu.cornell.mannlib.vivo.auth.policy - package edu.cornell.mannlib.vivo.auth.policy
edu.cornell.mannlib.vivo.orcid - package edu.cornell.mannlib.vivo.orcid
edu.cornell.mannlib.vivo.orcid.controller - package edu.cornell.mannlib.vivo.orcid.controller
endIndexing() - Method in class edu.cornell.mannlib.vitro.webapp.searchindex.extensions.LabelsAcrossContextNodes
Entity - Class in edu.cornell.mannlib.vitro.webapp.visualization.valueobjects: original @author bkoniden (Deepak Konidena) modified by @author cdtank (Chintan Tank)
Entity(String, String) - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Entity
Entity(String) - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Entity
ENTITY_COMPARISON_VIS - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants
ERROR_TEMPLATE - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants
event() - Method in class edu.cornell.mannlib.vitro.webapp.web.templatemodels.individual.VIVOIndividualTemplateModel
event - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
event - Variable in class org.vivoweb.webapp.createandlink.crossref.CrossrefCiteprocJSONModel
eventDate - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
eventPlace - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
exec() - Method in class edu.cornell.mannlib.vivo.orcid.controller.OrcidAddExternalIdHandler
exec() - Method in class edu.cornell.mannlib.vivo.orcid.controller.OrcidAuthAuthenticateHandler
exec() - Method in class edu.cornell.mannlib.vivo.orcid.controller.OrcidAuthExternalIdsHandler
exec() - Method in class edu.cornell.mannlib.vivo.orcid.controller.OrcidCallbackHandler
exec() - Method in class edu.cornell.mannlib.vivo.orcid.controller.OrcidDefaultHandler
exec() - Method in class edu.cornell.mannlib.vivo.orcid.controller.OrcidReadProfileHandler
ExportQrCodeController - Class in edu.cornell.mannlib.vitro.webapp.controller
ExportQrCodeController() - Constructor for class edu.cornell.mannlib.vitro.webapp.controller.ExportQrCodeController
externalId - Variable in class org.vivoweb.webapp.createandlink.Citation
ExternalIdentifiers - Class in org.vivoweb.webapp.createandlink
ExternalIdentifiers() - Constructor for class org.vivoweb.webapp.createandlink.ExternalIdentifiers
externalProvider - Variable in class org.vivoweb.webapp.createandlink.Citation
externalResource - Variable in class org.vivoweb.webapp.createandlink.Citation
extractConceptId(String) - Method in class edu.cornell.mannlib.semservices.service.impl.AgrovocService
extractConceptId(String) - Method in class edu.cornell.mannlib.semservices.service.impl.LCSHService

F

family - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel.NameField
family - Variable in class org.vivoweb.webapp.createandlink.crossref.CrossrefCiteprocJSONModel.NameField
family - Variable in class org.vivoweb.webapp.createandlink.ResourceModel.NameField
FedSearchController - Class in edu.cornell.mannlib.vitro.webapp.search.controller
FedSearchController() - Constructor for class edu.cornell.mannlib.vitro.webapp.search.controller.FedSearchController
FILE_CONTENT_KEY - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.DataVisualizationController
FILE_CONTENT_TYPE_KEY - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.DataVisualizationController
FILE_NAME_KEY - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.DataVisualizationController
FileHarvestController - Class in edu.cornell.mannlib.vitro.webapp.controller.harvester
FileHarvestController() - Constructor for class edu.cornell.mannlib.vitro.webapp.controller.harvester.FileHarvestController
findAdditionalURIsToIndex(Statement) - Method in class edu.cornell.mannlib.vitro.webapp.searchindex.extensions.LabelsAcrossContextNodes: If this is a "label" statement, check to see if the subject has any acceptable partners across acceptable context nodes.
findIndividual() - Method in class edu.cornell.mannlib.vivo.orcid.controller.OrcidAbstractHandler
findInExternal(String, Citation) - Method in interface org.vivoweb.webapp.createandlink.CreateAndLinkResourceProvider
findInExternal(String, Citation) - Method in class org.vivoweb.webapp.createandlink.crossref.CrossrefCreateAndLinkResourceProvider: Look up the DOI in CrossRef, and populate a citation object
findInExternal(String, Citation) - Method in class org.vivoweb.webapp.createandlink.crossref.CrossrefNativeAPI: Find the DOI in CrossRef, filling the citation object
findInExternal(String, Citation) - Method in class org.vivoweb.webapp.createandlink.crossref.CrossrefResolverAPI: Find the DOI in CrossRef, filling the citation object
findInExternal(String, Citation) - Method in class org.vivoweb.webapp.createandlink.pubmed.PubMedCreateAndLinkResourceProvider
findInVIVO(VitroRequest, ExternalIdentifiers, String, Citation) - Method in class org.vivoweb.webapp.controller.freemarker.CreateAndLinkResourceController: Try to find a resource in VIVO that defines one of the external identifiers
FirstAndLastNameValidator - Class in edu.cornell.mannlib.vitro.webapp.edit.n3editing
FirstAndLastNameValidator(String, I18nBundle) - Constructor for class edu.cornell.mannlib.vitro.webapp.edit.n3editing.FirstAndLastNameValidator
firstName - Variable in class edu.cornell.mannlib.vitro.webapp.visualization.model.Person
firstReferenceNoteNumber - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
FOAF_FIRSTNAME - Static variable in class org.vivoweb.webapp.controller.freemarker.CreateAndLinkResourceController
FOAF_LASTNAME - Static variable in class org.vivoweb.webapp.controller.freemarker.CreateAndLinkResourceController
formatAuthorString(String, String) - Static method in class org.vivoweb.webapp.createandlink.CreateAndLinkUtils
FREEMARKERIZED_VISUALIZATION_URL_PREFIX - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants
fromResponse(HttpResponse) - Static method in class org.vivoweb.webapp.createandlink.utils.HttpReader
FULL_SPARKLINE_VIS_MODE - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants

G

GemetService - Class in edu.cornell.mannlib.semservices.service.impl
GemetService() - Constructor for class edu.cornell.mannlib.semservices.service.impl.GemetService
generateAjaxVisualization(VitroRequest, Log, Dataset) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.capabilitymap.CapabilityMapRequestHandler
generateAjaxVisualization(VitroRequest, Log, Dataset) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.coauthorship.CoAuthorshipRequestHandler
generateAjaxVisualization(VitroRequest, Log, Dataset) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.coprincipalinvestigator.CoPIGrantCountRequestHandler
generateAjaxVisualization(VitroRequest, Log, Dataset) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.mapofscience.MapOfScienceVisualizationRequestHandler
generateAjaxVisualization(VitroRequest, Log, Dataset) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.modelconstructor.ModelConstructorRequestHandler
generateAjaxVisualization(VitroRequest, Log, Dataset) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.persongrantcount.PersonGrantCountRequestHandler
generateAjaxVisualization(VitroRequest, Log, Dataset) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.personlevel.PersonLevelRequestHandler
generateAjaxVisualization(VitroRequest, Log, Dataset) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.personpubcount.CumulativeCountRequestHandler
generateAjaxVisualization(VitroRequest, Log, Dataset) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.personpubcount.PersonPublicationCountRequestHandler
generateAjaxVisualization(VitroRequest, Log, Dataset) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.temporalgraph.TemporalGrantVisualizationRequestHandler
generateAjaxVisualization(VitroRequest, Log, Dataset) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.temporalgraph.TemporalPublicationVisualizationRequestHandler
generateAjaxVisualization(VitroRequest, Log, Dataset) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.tools.ToolsRequestHandler
generateAjaxVisualization(VitroRequest, Log, Dataset) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.utilities.UtilitiesRequestHandler
generateAjaxVisualization(VitroRequest, Log, Dataset) - Method in interface edu.cornell.mannlib.vitro.webapp.visualization.visutils.VisualizationRequestHandler
generateDataVisualization(VitroRequest, Log, Dataset) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.capabilitymap.CapabilityMapRequestHandler
generateDataVisualization(VitroRequest, Log, Dataset) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.coauthorship.CoAuthorshipRequestHandler
generateDataVisualization(VitroRequest, Log, Dataset) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.coprincipalinvestigator.CoPIGrantCountRequestHandler
generateDataVisualization(VitroRequest, Log, Dataset) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.mapofscience.MapOfScienceVisualizationRequestHandler
generateDataVisualization(VitroRequest, Log, Dataset) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.modelconstructor.ModelConstructorRequestHandler
generateDataVisualization(VitroRequest, Log, Dataset) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.persongrantcount.PersonGrantCountRequestHandler
generateDataVisualization(VitroRequest, Log, Dataset) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.personlevel.PersonLevelRequestHandler
generateDataVisualization(VitroRequest, Log, Dataset) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.personpubcount.CumulativeCountRequestHandler
generateDataVisualization(VitroRequest, Log, Dataset) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.personpubcount.PersonPublicationCountRequestHandler
generateDataVisualization(VitroRequest, Log, Dataset) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.temporalgraph.TemporalGrantVisualizationRequestHandler
generateDataVisualization(VitroRequest, Log, Dataset) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.temporalgraph.TemporalPublicationVisualizationRequestHandler
generateDataVisualization(VitroRequest, Log, Dataset) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.tools.ToolsRequestHandler
generateDataVisualization(VitroRequest, Log, Dataset) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.utilities.UtilitiesRequestHandler
generateDataVisualization(VitroRequest, Log, Dataset) - Method in interface edu.cornell.mannlib.vitro.webapp.visualization.visutils.VisualizationRequestHandler
generateModelIdentifier(String, String) - Static method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.ConstructedModelTracker
generateN3Optional() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddAuthorsToInformationResourceGenerator
generateN3Optional() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddEditorsToInformationResourceGenerator
generateN3Optional(VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.VIVODefaultAddMissingIndividualFormGenerator
generateNewResources(VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.VIVODefaultAddMissingIndividualFormGenerator
generateStandardVisualization(VitroRequest, Log, Dataset) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.capabilitymap.CapabilityMapRequestHandler
generateStandardVisualization(VitroRequest, Log, Dataset) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.coauthorship.CoAuthorshipRequestHandler
generateStandardVisualization(VitroRequest, Log, Dataset) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.coprincipalinvestigator.CoPIGrantCountRequestHandler
generateStandardVisualization(VitroRequest, Log, Dataset) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.mapofscience.MapOfScienceVisualizationRequestHandler
generateStandardVisualization(VitroRequest, Log, Dataset) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.modelconstructor.ModelConstructorRequestHandler
generateStandardVisualization(VitroRequest, Log, Dataset) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.persongrantcount.PersonGrantCountRequestHandler
generateStandardVisualization(VitroRequest, Log, Dataset) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.personlevel.PersonLevelRequestHandler
generateStandardVisualization(VitroRequest, Log, Dataset) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.personpubcount.CumulativeCountRequestHandler
generateStandardVisualization(VitroRequest, Log, Dataset) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.personpubcount.PersonPublicationCountRequestHandler
generateStandardVisualization(VitroRequest, Log, Dataset) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.temporalgraph.TemporalGrantVisualizationRequestHandler
generateStandardVisualization(VitroRequest, Log, Dataset) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.temporalgraph.TemporalPublicationVisualizationRequestHandler
generateStandardVisualization(VitroRequest, Log, Dataset) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.tools.ToolsRequestHandler
generateStandardVisualization(VitroRequest, Log, Dataset) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.utilities.UtilitiesRequestHandler
generateStandardVisualization(VitroRequest, Log, Dataset) - Method in interface edu.cornell.mannlib.vitro.webapp.visualization.visutils.VisualizationRequestHandler
generateVisualizationForShortURLRequests(Map<String, String>, VitroRequest, Log, Dataset) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.capabilitymap.CapabilityMapRequestHandler
generateVisualizationForShortURLRequests(Map<String, String>, VitroRequest, Log, Dataset) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.coauthorship.CoAuthorshipRequestHandler
generateVisualizationForShortURLRequests(Map<String, String>, VitroRequest, Log, Dataset) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.coprincipalinvestigator.CoPIGrantCountRequestHandler
generateVisualizationForShortURLRequests(Map<String, String>, VitroRequest, Log, Dataset) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.mapofscience.MapOfScienceVisualizationRequestHandler
generateVisualizationForShortURLRequests(Map<String, String>, VitroRequest, Log, Dataset) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.modelconstructor.ModelConstructorRequestHandler
generateVisualizationForShortURLRequests(Map<String, String>, VitroRequest, Log, Dataset) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.persongrantcount.PersonGrantCountRequestHandler
generateVisualizationForShortURLRequests(Map<String, String>, VitroRequest, Log, Dataset) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.personlevel.PersonLevelRequestHandler
generateVisualizationForShortURLRequests(Map<String, String>, VitroRequest, Log, Dataset) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.personpubcount.CumulativeCountRequestHandler
generateVisualizationForShortURLRequests(Map<String, String>, VitroRequest, Log, Dataset) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.personpubcount.PersonPublicationCountRequestHandler
generateVisualizationForShortURLRequests(Map<String, String>, VitroRequest, Log, Dataset) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.temporalgraph.TemporalGrantVisualizationRequestHandler
generateVisualizationForShortURLRequests(Map<String, String>, VitroRequest, Log, Dataset) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.temporalgraph.TemporalPublicationVisualizationRequestHandler
generateVisualizationForShortURLRequests(Map<String, String>, VitroRequest, Log, Dataset) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.tools.ToolsRequestHandler
generateVisualizationForShortURLRequests(Map<String, String>, VitroRequest, Log, Dataset) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.utilities.UtilitiesRequestHandler
generateVisualizationForShortURLRequests(Map<String, String>, VitroRequest, Log, Dataset) - Method in interface edu.cornell.mannlib.vitro.webapp.visualization.visutils.VisualizationRequestHandler
GeneratorSetup - Class in org.vivoweb.webapp.startup
GeneratorSetup() - Constructor for class org.vivoweb.webapp.startup.GeneratorSetup
GeneratorUtil - Class in edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators
GeneratorUtil() - Constructor for class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.GeneratorUtil
GenericQueryMap - Class in edu.cornell.mannlib.vitro.webapp.visualization.valueobjects: Right now this is just acting as a hashmap but in future we would want to provide more detailed info other than just what properties had what values.
GenericQueryMap() - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.GenericQueryMap
GenericQueryRunner - Class in edu.cornell.mannlib.vitro.webapp.visualization.visutils: This query runner is used to run a generic sparql query based on the "select", "where" & "filter" rules provided to it.
GenericQueryRunner(Map<String, String>, String, String, String, Dataset) - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.visutils.GenericQueryRunner
GenericQueryRunnerOnModel - Class in edu.cornell.mannlib.vitro.webapp.visualization.visutils: This query runner is used to run a generic sparql query based on the "select", "where" & "filter" rules provided to it.
GenericQueryRunnerOnModel(Map<String, String>, String, String, String, Model) - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.visutils.GenericQueryRunnerOnModel
genre - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
GeoFocusMapLocations - Class in edu.cornell.mannlib.vitro.webapp.controller.ajax
GeoFocusMapLocations(HttpServlet, VitroRequest, HttpServletResponse) - Constructor for class edu.cornell.mannlib.vitro.webapp.controller.ajax.GeoFocusMapLocations
GeoFocusResearcherCount - Class in edu.cornell.mannlib.vitro.webapp.controller.ajax
GeoFocusResearcherCount(HttpServlet, VitroRequest, HttpServletResponse) - Constructor for class edu.cornell.mannlib.vitro.webapp.controller.ajax.GeoFocusResearcherCount
get(RDFService) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.utilities.CachingRDFServiceExecutor: Return the cached results if present, or start the task.
get(RDFService, boolean) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.utilities.CachingRDFServiceExecutor: Return the cached results if present, or start the task.
get(RDFService, boolean, boolean) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.utilities.CachingRDFServiceExecutor
getActivities() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.SubEntity
getActivityDate() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Activity: This method should be used to get the raw date & not the parsed publication year.
getActivityLabel() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Activity
getActivityType() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Activity
getActivityTypeQueryForChildVClassOptions(VitroRequest, ChildVClassesOptions) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddRoleToPersonTwoStageGenerator: Utility method for subclasses to make a query for type from a ChildVClassesOptions object.
getActivityTypeQueryForConstantOptions(VitroRequest, ConstantFieldOptions) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddRoleToPersonTwoStageGenerator: Utility method for subclasses to make a query for type from a ConstantFieldOptions object.
getActivityTypeQueryForIndividualsViaClassGroupOptions(VitroRequest, IndividualsViaClassGroupOptions) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddRoleToPersonTwoStageGenerator: Utility method for subclasses to make a query for type from a IndividualsViaClassGroupOptions object.
getActivityURI() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Activity
getActivityYearToCollaborators(CollaborationData) - Static method in class edu.cornell.mannlib.vitro.webapp.visualization.visutils.UtilityFunctions: This method is used to return a mapping between activity year & all the collaborators that published with ego in that year.
getAdjacentNodes(String) - Method in class edu.cornell.mannlib.vitro.webapp.searchindex.documentBuilding.CalculateParameters
getAgrovocTermCode(String) - Method in class edu.cornell.mannlib.semservices.service.impl.AgrovocService
getAllModels() - Static method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.ConstructedModelTracker
getAllTranslationsForConcept(String, String) - Method in class edu.cornell.mannlib.semservices.service.impl.GemetService
getAlreadyClaimed() - Method in class org.vivoweb.webapp.createandlink.Citation
getAuthorName() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddAuthorsToInformationResourceGenerator.AuthorshipInfo
getAuthorName() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.personpubcount.PersonPublicationCountQueryRunner
getAuthors() - Method in class org.vivoweb.webapp.createandlink.Citation
getAuthorshipName() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddAuthorsToInformationResourceGenerator.AuthorshipInfo
getAuthorshipsQuery() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddAuthorsToInformationResourceGenerator
getAuthorshipUri() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddAuthorsToInformationResourceGenerator.AuthorshipInfo
getAuthorUri() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddAuthorsToInformationResourceGenerator.AuthorshipInfo
getAvailableLangs(String) - Method in class edu.cornell.mannlib.semservices.service.impl.GemetService
getBuiltFromCacheTime() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.collaborationutils.CollaborationData
getClassIntersectionsMap(Model) - Method in class edu.cornell.mannlib.vitro.webapp.utils.dataGetter.InternalClassesDataGetter
getClassType() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.preprocessors.utils.ProcessInternalClassDataGetterN3
getCoAuthorshipGraphMLContent() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.coauthorship.CoAuthorshipGraphMLWriter
getCollaborationActivities() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Collaboration
getCollaborationID() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Collaboration
getCollaborationMatrix() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.visutils.CollaborationDataViewHelper
getCollaborations() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.collaborationutils.CollaborationData
getCollaboratorActivities() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Collaborator
getCollaboratorID() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Collaborator
getCollaboratorName() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Collaborator
getCollaborators() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.collaborationutils.CollaborationData
getCollaborators() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.visutils.CollaborationDataViewHelper
getCollaboratorsCount() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.visutils.CollaborationDataViewHelper
getCollaboratorshipNetworkLink(String, String, String) - Static method in class edu.cornell.mannlib.vitro.webapp.visualization.visutils.UtilityFunctions
getCollaboratorURI() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Collaborator
getConcept(String) - Method in class edu.cornell.mannlib.semservices.service.impl.GemetService
getConceptLabel() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddAssociatedConceptGenerator.AssociatedConceptInfo
getConcepts(String) - Method in class edu.cornell.mannlib.semservices.service.impl.AgrovocService
getConcepts(String) - Method in class edu.cornell.mannlib.semservices.service.impl.GemetService
getConcepts(String) - Method in class edu.cornell.mannlib.semservices.service.impl.LCSHService
getConcepts(String) - Method in class edu.cornell.mannlib.semservices.service.impl.UMLSService
getConceptsByURIWithSparql(String) - Method in class edu.cornell.mannlib.semservices.service.impl.AgrovocService
getConceptsByURIWithSparql(String) - Method in class edu.cornell.mannlib.semservices.service.impl.GemetService
getConceptsByURIWithSparql(String) - Method in class edu.cornell.mannlib.semservices.service.impl.LCSHService
getConceptsByURIWithSparql(String) - Method in class edu.cornell.mannlib.semservices.service.impl.UMLSService
getConceptSearchServiceClassName(String) - Static method in class edu.cornell.mannlib.vitro.webapp.utils.ConceptSearchService.ConceptSearchServiceUtils
getConceptSemanticTypeLabel() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddAssociatedConceptGenerator.AssociatedConceptInfo
getConceptSemanticTypeURI() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddAssociatedConceptGenerator.AssociatedConceptInfo
getConceptsMatchingKeyword(String) - Method in class edu.cornell.mannlib.semservices.service.impl.GemetService
getConceptURI() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddAssociatedConceptGenerator.AssociatedConceptInfo
getConceptURIFromRDF(String) - Method in class edu.cornell.mannlib.semservices.service.impl.AgrovocService
getConceptURIFromXML(String) - Method in class edu.cornell.mannlib.semservices.service.impl.LCSHService
getConceptURISFromJSON(String) - Method in class edu.cornell.mannlib.semservices.service.impl.LCSHService
getConceptURIsListFromRDF(String) - Method in class edu.cornell.mannlib.semservices.service.impl.AgrovocService
getConstructedModel() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.coprincipalinvestigator.CoPIGrantCountConstructQueryRunner
getConstructedModel() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.modelconstructor.PersonToGrantsModelConstructor
getConstructedModel() - Method in interface edu.cornell.mannlib.vitro.webapp.visualization.visutils.CachedModelConstructor
getConstructedModel() - Method in interface edu.cornell.mannlib.vitro.webapp.visualization.visutils.ModelConstructor
getCoPIGraphMLContent() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.coprincipalinvestigator.CoPIGraphMLWriter
getCSVDownloadURL(String, String, String) - Static method in class edu.cornell.mannlib.vitro.webapp.visualization.visutils.UtilityFunctions
getCurrentEntitiesCount() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.YearToEntityCountDataElement
getCurrentPredicate(VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddUserDefinedConceptGenerator
getData(Map<String, Object>) - Method in class edu.cornell.mannlib.vivo.orcid.OrcidIdDataGetter
getDateTimePrecisionURI() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddGrantRoleToPersonGenerator
getDateTimeValueTypeURI() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddGrantRoleToPersonGenerator
getDateTimeValueURI() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddGrantRoleToPersonGenerator
getDbpediaDescription(String) - Method in class edu.cornell.mannlib.semservices.service.impl.AgrovocService
getDefaultgrantToRolePredicate() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddGrantRoleToPersonGenerator
getDefaultroleToGrantPredicate() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddGrantRoleToPersonGenerator
getDeleteLinkURL() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.ManageLabelsForPersonGenerator.LabelInformation
getDescription() - Method in class edu.cornell.mannlib.vitro.webapp.utils.ConceptSearchService.VocabSourceDescription
getDocuments() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.collaborationutils.CoAuthorshipData
getDOI() - Method in class org.vivoweb.webapp.createandlink.Citation
getDownloadDataLink() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.SparklineData
getEarliestActivityYearCount() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Collaborator
getEarliestCollaborationYearCount() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Collaboration
getEarliestRenderedGrantYear() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.SparklineData
getEarliestRenderedPublicationYear() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.SparklineData
getEarliestYearConsidered() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.SparklineData
getEdgeSchema() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.collaborationutils.CollaborationData
getEditConfiguration(VitroRequest, HttpSession) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddAssociatedConceptGenerator
getEditConfiguration(VitroRequest, HttpSession) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddAuthorsToInformationResourceGenerator
getEditConfiguration(VitroRequest, HttpSession) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddConceptThroughObjectPropertyGenerator
getEditConfiguration(VitroRequest, HttpSession) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddEditorshipToPersonGenerator
getEditConfiguration(VitroRequest, HttpSession) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddEditorsToInformationResourceGenerator
getEditConfiguration(VitroRequest, HttpSession) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddEditWebpageFormGenerator
getEditConfiguration(VitroRequest, HttpSession) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddFullNameToPersonGenerator
getEditConfiguration(VitroRequest, HttpSession) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddGrantRoleToPersonGenerator
getEditConfiguration(VitroRequest, HttpSession) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddOrcidIdToPersonGenerator
getEditConfiguration(VitroRequest, HttpSession) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddPresenterRoleToPersonGenerator
getEditConfiguration(VitroRequest, HttpSession) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddPublicationToPersonGenerator
getEditConfiguration(VitroRequest, HttpSession) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddRoleToPersonTwoStageGenerator: URI of predicate between role context node and activity
getEditConfiguration(VitroRequest, HttpSession) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddUserDefinedConceptGenerator
getEditConfiguration(VitroRequest, HttpSession) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AutocompleteDataPropertyFormGenerator
getEditConfiguration(VitroRequest, HttpSession) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.GrantAdministeredByGenerator
getEditConfiguration(VitroRequest, HttpSession) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.GrantHasContributorGenerator
getEditConfiguration(VitroRequest, HttpSession) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.ManageLabelsForPersonGenerator
getEditConfiguration(VitroRequest, HttpSession) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.ManageWebpagesForIndividualGenerator
getEditConfiguration(VitroRequest, HttpSession) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.OrganizationAdministersGrantGenerator
getEditConfiguration(VitroRequest, HttpSession) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.OrganizationForTrainingGenerator
getEditConfiguration(VitroRequest, HttpSession) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.OrganizationHasPositionHistoryGenerator
getEditConfiguration(VitroRequest, HttpSession) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.PersonHasAdviseeRelationshipGenerator
getEditConfiguration(VitroRequest, HttpSession) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.PersonHasAdvisorRelationshipGenerator
getEditConfiguration(VitroRequest, HttpSession) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.PersonHasAwardOrHonorGenerator
getEditConfiguration(VitroRequest, HttpSession) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.PersonHasEducationalTraining
getEditConfiguration(VitroRequest, HttpSession) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.PersonHasEmailGenerator
getEditConfiguration(VitroRequest, HttpSession) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.PersonHasIssuedCredentialGenerator
getEditConfiguration(VitroRequest, HttpSession) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.PersonHasPositionHistoryGenerator
getEditConfiguration(VitroRequest, HttpSession) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.PersonHasPreferredTitleGenerator
getEditConfiguration(VitroRequest, HttpSession) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.ProjectHasParticipantGenerator
getEditConfiguration(VitroRequest, HttpSession) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.SubjectHasMailingAddressGenerator
getEditConfiguration(VitroRequest, HttpSession) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.SubjectHasPhoneFaxNumberGenerator
getEditConfiguration(VitroRequest, HttpSession) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.VIVOManageLabelsGenerator
getEditConfiguration(VitroRequest, HttpSession) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.VIVONewIndividualFormGenerator
getEditForm() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.ManageLabelsForPersonGenerator
getEditForm() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.ManageWebpagesForIndividualGenerator
getEditLinkURL() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.ManageLabelsForPersonGenerator.LabelInformation
getEditMode(VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddEditorshipToPersonGenerator
getEditMode(VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddGrantRoleToPersonGenerator: Methods for checking edit mode **
getEditMode(VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddPublicationToPersonGenerator
getEditMode(VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddRoleToPersonTwoStageGenerator
getEditMode(VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AutocompleteDataPropertyFormGenerator
getEditMode(VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.GrantHasContributorGenerator
getEditMode(VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.OrganizationForTrainingGenerator
getEditMode(VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.PersonHasEducationalTraining
getEditMode(VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.PersonHasPositionHistoryGenerator
getEditMode(VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.ProjectHasParticipantGenerator
getEditorName() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddEditorsToInformationResourceGenerator.EditorshipInfo
getEditorshipName() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddEditorsToInformationResourceGenerator.EditorshipInfo
getEditorshipsQuery() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddEditorsToInformationResourceGenerator
getEditorshipUri() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddEditorsToInformationResourceGenerator.EditorshipInfo
getEditorUri() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddEditorsToInformationResourceGenerator.EditorshipInfo
getEgoCollaborator() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.collaborationutils.CollaborationData
getEmail() - Method in class edu.cornell.mannlib.vitro.webapp.web.templatemodels.searchresult.VIVOIndividualSearchResult
getEnabledProviders(ConfigurationProperties) - Static method in class org.vivoweb.webapp.controller.freemarker.CreateAndLinkResourceController
getEndDatePrecision() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddRoleToPersonTwoStageGenerator
getEndYearPredURI() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddGrantRoleToPersonGenerator
getEntityClass() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.SubEntity
getEntityLabel() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Entity
getEntityLabelFromDAO(VitroRequest, String) - Static method in class edu.cornell.mannlib.vitro.webapp.visualization.temporalgraph.OrganizationUtilityFunctions
getEntityTypeLabels() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.SubEntity
getEntityURI() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Entity
getEntityURI() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.json.JsonObject
getExistingResource(VitroRequest, String) - Method in class org.vivoweb.webapp.controller.freemarker.CreateAndLinkResourceController: Find an existing resource in VIVO, and return a Model with the appropriate statements
getExistingValuesInternalClass(String) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.preprocessors.utils.ProcessInternalClassDataGetterN3
getExistingValuesJSON(String, OntModel, ServletContext) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.preprocessors.utils.ProcessInternalClassDataGetterN3
getExternalId() - Method in class org.vivoweb.webapp.createandlink.Citation
getExternalProvider() - Method in class org.vivoweb.webapp.createandlink.Citation
getExternalResource() - Method in class org.vivoweb.webapp.createandlink.Citation
getFileHarvestRootPath(HttpServletRequest) - Static method in class edu.cornell.mannlib.vitro.webapp.controller.harvester.FileHarvestController: Returns the path on this machine of the area within Harvester reserved for File Harvest.
getFilterRoleToActivityPredicate(String) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddRoleToPersonTwoStageGenerator
getFOAFPersonClassURI() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.ManageLabelsForPersonGenerator
getFOAFPersonClassURI() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.VIVODefaultAddMissingIndividualFormGenerator
getFOAFPersonClassURI() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.VIVOManageLabelsGenerator
getFOAFPersonClassURI() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.VIVONewIndividualFormGenerator
getFullCodeToLanguageNameMap(List<HashMap<String, String>>) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.ManageLabelsForPersonGenerator
getFullLanguagesNamesSortedList(List<Map<String, Object>>) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.ManageLabelsForPersonGenerator
getFullTimelineNetworkLink() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.SparklineData
getGemetResults(String) - Method in class edu.cornell.mannlib.semservices.service.impl.GemetService
getGrants() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.collaborationutils.CoInvestigationData
getGrantToRolePredicate(VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddGrantRoleToPersonGenerator
getGrantType() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddGrantRoleToPersonGenerator
getHarvesterPath(HttpServletRequest) - Static method in class edu.cornell.mannlib.vitro.webapp.controller.harvester.FileHarvestController: Returns the root location of the VIVO Harvester on this machine.
getHighestLevelOrganizationURI(ResultSet, Map<String, String>) - Static method in class edu.cornell.mannlib.vitro.webapp.visualization.temporalgraph.OrganizationUtilityFunctions
getHighestLevelOrganizationURI(Log, Dataset) - Static method in class edu.cornell.mannlib.vitro.webapp.visualization.temporalgraph.OrganizationUtilityFunctions
getHumanReadableType() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.ConstructedModel
getIndividualLabel() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.ConstructedModel
getIndividualLabel() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Individual
getIndividualLabelFromDAO(VitroRequest, String) - Static method in class edu.cornell.mannlib.vitro.webapp.visualization.visutils.UtilityFunctions
getIndividualLocalName(String, VitroRequest) - Static method in class edu.cornell.mannlib.vitro.webapp.visualization.visutils.UtilityFunctions: This method will test whether the current uri is based off of default namespace.
getIndividualURI() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Individual
getIntervalToEndURI() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddGrantRoleToPersonGenerator
getIntervalToStartURI() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddGrantRoleToPersonGenerator
getIntervalTypeURI() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddGrantRoleToPersonGenerator
getIssue() - Method in class org.vivoweb.webapp.createandlink.Citation
getItemType(MultiValueEditSubmission) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.preprocessors.RoleToActivityPredicatePreprocessor
getItemType(MultiValueEditSubmission) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.preprocessors.RoleToPredicatePreprocessor
getJournal() - Method in class org.vivoweb.webapp.createandlink.Citation
getJsonValue(ObjectNode, String) - Method in class edu.cornell.mannlib.semservices.service.impl.GemetService: Get a string from a json object or an empty string if there is no value for the given key
getJsonValue(ObjectNode, String) - Method in class edu.cornell.mannlib.semservices.service.impl.UMLSService: Get a string from a json object or an empty string if there is no value for the given key
getKey() - Method in class org.vivoweb.webapp.createandlink.ContributorRole
getLabel() - Method in class edu.cornell.mannlib.vitro.webapp.utils.ConceptSearchService.VocabSourceDescription
getLabel() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.json.JsonObject
getLabel() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.json.MapOfScience
getLabel() - Method in class org.vivoweb.webapp.controller.freemarker.CreateAndLinkResourceController.PublicationType
getLabel() - Method in class org.vivoweb.webapp.createandlink.ContributorRole
getLabel() - Method in interface org.vivoweb.webapp.createandlink.CreateAndLinkResourceProvider
getLabel() - Method in class org.vivoweb.webapp.createandlink.crossref.CrossrefCreateAndLinkResourceProvider: Label for the UI
getLabel() - Method in class org.vivoweb.webapp.createandlink.pubmed.PubMedCreateAndLinkResourceProvider
getLabelLiteral() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.ManageLabelsForPersonGenerator.LabelInformation
getLabelStringValue() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.ManageLabelsForPersonGenerator.LabelInformation
getLanguageCode() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.ManageLabelsForPersonGenerator.LabelInformation
getLanguageName() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.ManageLabelsForPersonGenerator.LabelInformation
getLastCachedAtDateTime() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.json.JsonObject
getLastCachedAtDateTime() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.json.MapOfScience
getLastCachedAtDateTime() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.SubEntity
getLatestActivityYearCount() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Collaborator
getLatestCollaborationYearCount() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Collaboration
getLatestRenderedGrantYear() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.SparklineData
getLatestRenderedPublicationYear() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.SparklineData
getLinked() - Method in class org.vivoweb.webapp.createandlink.Citation.Name
getLiteralVarNamesBase() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.preprocessors.utils.ProcessInternalClassDataGetterN3
getLocales(VitroRequest, List<Literal>) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.ManageLabelsForPersonGenerator
getLock() - Static method in class edu.cornell.mannlib.vitro.webapp.visualization.visutils.CustomLock
getMaxRankQueryStr() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddAuthorsToInformationResourceGenerator
getMaxRankQueryStr() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddEditorsToInformationResourceGenerator
getMaxRankQueryStr() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddEditWebpageFormGenerator
getModel(String) - Static method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.ConstructedModelTracker
getModelType() - Method in interface edu.cornell.mannlib.vitro.webapp.visualization.visutils.CachedModelConstructor
getN3ForExistingGrant(VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddGrantRoleToPersonGenerator
getN3ForGrantRole(VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddGrantRoleToPersonGenerator
getN3ForName() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.VIVODefaultAddMissingIndividualFormGenerator
getN3ForNewGrant(VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddGrantRoleToPersonGenerator
getN3ForWebpage() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddEditWebpageFormGenerator
getN3Prefixes() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.VIVODefaultAddMissingIndividualFormGenerator
getN3PrefixString() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddAuthorsToInformationResourceGenerator: N3 strings both required and optional
getN3PrefixString() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddEditorsToInformationResourceGenerator: N3 strings both required and optional
getName() - Method in class org.vivoweb.webapp.createandlink.Citation.Name
getNextNumericID() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.visutils.UniqueIDGenerator
getNodeSchema() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.collaborationutils.CollaborationData
getNoWait(RDFService) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.utilities.CachingRDFServiceExecutor: Return the cached results if present, or start the task.
getNumOfActivities() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Collaborator
getNumOfCollaborations() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Collaboration
getNumOfYearsToBeRendered() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.SparklineData
getObjectCountByYear(Set<String>, Map<String, String>) - Static method in class edu.cornell.mannlib.vitro.webapp.visualization.utilities.CounterUtils
getObjectMappingsForOrgAndSubOrgs(String, Set<String>, Set<String>, Map<String, Set<String>>, Map<String, Set<String>>, Map<String, Set<String>>, Map<String, Set<String>>) - Static method in class edu.cornell.mannlib.vitro.webapp.visualization.utilities.OrgUtils
getOrConstructModel(String, String, RDFService) - Static method in class edu.cornell.mannlib.vitro.webapp.visualization.modelconstructor.ModelConstructorUtilities
getOrCreateModel(String, RDFService) - Method in interface edu.cornell.mannlib.vitro.webapp.visualization.modelconstructor.factory.ModelFactoryInterface
getOrganizationTypes() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.json.JsonObject
getPagination() - Method in class org.vivoweb.webapp.createandlink.Citation
getParents() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Entity
getParentURIsToLabel(String, Map<String, Set<String>>, Map<String, String>) - Static method in class edu.cornell.mannlib.vitro.webapp.visualization.utilities.OrgUtils
getParentURIToLabel() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.json.SubjectEntityJSON
getParsedActivityYear() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Activity: This method will be called to get the final/inferred year for the publication.
getPossibleActivityToRolePredicates() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddRoleToPersonTwoStageGenerator
getPossibleGrantToRolePredicates() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddGrantRoleToPersonGenerator
getPossibleInversePropertiesForRole() - Static method in class org.vivoweb.webapp.util.ModelUtils
getPossiblePropertiesForRole() - Static method in class org.vivoweb.webapp.util.ModelUtils
getPossibleRoleToActivityPredicates() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddRoleToPersonTwoStageGenerator
getPossibleRoleToGrantPredicates() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddGrantRoleToPersonGenerator
getPreferredTitle() - Method in class edu.cornell.mannlib.vitro.webapp.web.templatemodels.individuallist.VIVOListedIndividual
getPreferredTitle() - Method in class edu.cornell.mannlib.vitro.webapp.web.templatemodels.searchresult.VIVOIndividualSearchResult
getPropertyForRoleInClass(String, WebappDaoFactory) - Static method in class org.vivoweb.webapp.util.ModelUtils
getPropertyFromJson(String) - Method in class edu.cornell.mannlib.semservices.service.impl.GemetService
getProposed() - Method in class org.vivoweb.webapp.createandlink.Citation.Name
getPublicationYear() - Method in class org.vivoweb.webapp.createandlink.Citation
getPublishedInJournal() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.MapOfScienceActivity
getPublisherURI(VitroRequest, String) - Method in class org.vivoweb.webapp.controller.freemarker.CreateAndLinkResourceController: Get a URI for the publisher object
getPubsMapped() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.json.MapOfScience
getPubsWithInvalidJournals() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.json.MapOfScience
getPubsWithNoJournals() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.json.MapOfScience
getQuery(VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.ManageWebpagesForIndividualGenerator
getQueryResult() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.coauthorship.CoAuthorshipQueryRunner
getQueryResult() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.coprincipalinvestigator.CoPIGrantCountQueryRunner
getQueryResult() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.persongrantcount.PersonGrantCountQueryRunner
getQueryResult() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.personpubcount.PersonPublicationCountQueryRunner
getQueryResult() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.visutils.AllPropertiesQueryRunner
getQueryResult() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.visutils.GenericQueryRunner
getQueryResult() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.visutils.GenericQueryRunnerOnModel
getQueryResult() - Method in interface edu.cornell.mannlib.vitro.webapp.visualization.visutils.QueryRunner
getRangeTypes(VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddConceptThroughObjectPropertyGenerator
getRelatedConcepts(String, String) - Method in class edu.cornell.mannlib.semservices.service.impl.GemetService
getRelatedUris(String) - Method in class edu.cornell.mannlib.semservices.service.impl.GemetService
getRenderedSparks() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.SparklineData
getRequiredPrivileges() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.capabilitymap.CapabilityMapRequestHandler
getRequiredPrivileges() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.coauthorship.CoAuthorshipRequestHandler
getRequiredPrivileges() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.coprincipalinvestigator.CoPIGrantCountRequestHandler
getRequiredPrivileges() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.mapofscience.MapOfScienceVisualizationRequestHandler
getRequiredPrivileges() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.modelconstructor.ModelConstructorRequestHandler
getRequiredPrivileges() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.persongrantcount.PersonGrantCountRequestHandler
getRequiredPrivileges() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.personlevel.PersonLevelRequestHandler
getRequiredPrivileges() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.personpubcount.CumulativeCountRequestHandler
getRequiredPrivileges() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.personpubcount.PersonPublicationCountRequestHandler
getRequiredPrivileges() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.temporalgraph.TemporalGrantVisualizationRequestHandler
getRequiredPrivileges() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.temporalgraph.TemporalPublicationVisualizationRequestHandler
getRequiredPrivileges() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.tools.ToolsRequestHandler
getRequiredPrivileges() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.utilities.UtilitiesRequestHandler
getRequiredPrivileges() - Method in interface edu.cornell.mannlib.vitro.webapp.visualization.visutils.VisualizationRequestHandler
getRoleToActivityPredicate(VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddRoleToPersonTwoStageGenerator
getRoleToGrantPredicate(VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddGrantRoleToPersonGenerator
getRoleToIntervalURI() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddGrantRoleToPersonGenerator
getRoleType(VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddGrantRoleToPersonGenerator: Methods that are REQUIRED to be implemented in subclasses
getRoleType() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddResearcherRoleToPersonGenerator
getRoleType() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddReviewerRoleToPersonGenerator
getSchema() - Method in class edu.cornell.mannlib.vitro.webapp.utils.ConceptSearchService.VocabSourceDescription
getSearchResults(ServletContext, VitroRequest) - Static method in class edu.cornell.mannlib.vitro.webapp.utils.ConceptSearchService.ConceptSearchServiceUtils
getShowError() - Method in class org.vivoweb.webapp.createandlink.Citation
getSourceCollaborator() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Collaboration
getSparqlForAcFilter(VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddGrantRoleToPersonGenerator
getSparqlForAcFilter(VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddPublicationToPersonGenerator
getSparqlForAcFilter(VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddUserDefinedConceptGenerator
getSparqlForAcFilter(VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AutocompleteDataPropertyFormGenerator
getSparqlForAcFilter(VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.PersonHasAdviseeRelationshipGenerator
getSparqlForAcFilter(VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.PersonHasAdvisorRelationshipGenerator
getSparqlPrefixQuery() - Static method in class edu.cornell.mannlib.vitro.webapp.visualization.constants.QueryConstants
getStaffProvidedOrComputedHighestLevelOrganization(Log, Dataset, VitroRequest) - Static method in class edu.cornell.mannlib.vitro.webapp.visualization.temporalgraph.OrganizationUtilityFunctions
getStartDatePrecision() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddRoleToPersonTwoStageGenerator
getStartYearPredURI() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddGrantRoleToPersonGenerator
getSubdisciplineActivity() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.json.MapOfScience
getSubEntities() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Entity
getSubEntities() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.json.MapOfScience
getSubjectEntityLabel() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.json.SubjectEntityJSON
getSubjectEntityURI() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.json.SubjectEntityJSON
getTargetCollaborator() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Collaboration
getTemplate() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddEditWebpageFormGenerator
getTemplate() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.ManageLabelsForPersonGenerator
getTemplate() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.ManageWebpagesForIndividualGenerator
getTitle(String, VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.controller.AboutQrCodesController
getTitle(String, VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.controller.ExportQrCodeController
getTitle(String, VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.controller.harvester.FileHarvestController
getTitle() - Method in class org.vivoweb.webapp.createandlink.Citation
getTotalCollaborationshipCount() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.SparklineData
getType() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddAssociatedConceptGenerator.AssociatedConceptInfo
getType() - Method in class edu.cornell.mannlib.vitro.webapp.utils.dataGetter.InternalClassesDataGetter
getType() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.ConstructedModel
getType() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.json.MapOfScience
getType() - Method in class org.vivoweb.webapp.createandlink.Citation
getTypeUri() - Method in class org.vivoweb.webapp.createandlink.Citation
getUnknownActivityYearCount() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Collaborator
getUnknownCollaborationYearCount() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Collaboration
getUnknownYearGrants() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.SparklineData
getUnknownYearPublications() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.SparklineData
getUploadPath(VitroRequest) - Static method in class edu.cornell.mannlib.vitro.webapp.controller.harvester.FileHarvestController: Gets the location where we want to save uploaded files.
getUri() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.ConstructedModel
getUri() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.json.MapOfScience
getUri() - Method in class org.vivoweb.webapp.controller.freemarker.CreateAndLinkResourceController.PublicationType
getUri() - Method in class org.vivoweb.webapp.createandlink.ContributorRole
getUrl() - Method in class edu.cornell.mannlib.vitro.webapp.utils.ConceptSearchService.VocabSourceDescription
getValidParsedDateTimeObject(String) - Static method in class edu.cornell.mannlib.vitro.webapp.visualization.visutils.UtilityFunctions
getValidYearFromCoreDateTimeString(String, String) - Static method in class edu.cornell.mannlib.vitro.webapp.visualization.visutils.UtilityFunctions: This method will be called to get the inferred end year for the entity.
getValueObjectContainer() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.coauthorship.CoAuthorshipVisCodeGenerator
getValueObjectContainer() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.coprincipalinvestigator.CoPIVisCodeGenerator
getValueObjectContainer() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.persongrantcount.PersonGrantCountVisCodeGenerator
getValueObjectContainer() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.personpubcount.PersonPublicationCountVisCodeGenerator
getVCardURI(VitroRequest, String, String) - Method in class org.vivoweb.webapp.controller.freemarker.CreateAndLinkResourceController: Get a URI for a VCARD object
getVClasses(EditConfigurationVTwo, VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.ManageLabelsForPersonGenerator
getVClasses(String, VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.VIVOManageLabelsGenerator
getVisContainerDivID() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.SparklineData
getVisMode() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.json.JsonObject
getVisualizationIDsToClassMap(ServletContext) - Static method in class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationsDependencyInjector
getVivoCoreNamespace() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddGrantRoleToPersonGenerator: Methods to return URIS for various predicates
getVivoUri() - Method in class org.vivoweb.webapp.createandlink.Citation
getVocabLabel() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddAssociatedConceptGenerator.AssociatedConceptInfo
getVocabSources() - Static method in class edu.cornell.mannlib.vitro.webapp.utils.ConceptSearchService.ConceptSearchServiceUtils
getVocabURI() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddAssociatedConceptGenerator.AssociatedConceptInfo
getVolume() - Method in class org.vivoweb.webapp.createandlink.Citation
getYear() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.YearToEntityCountDataElement
getYearToActivityCount() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Collaboration
getYearToActivityCount() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Collaborator
getYearToActivityCount() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.json.JsonObject
getYearToActivityCount() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.SparklineData
getYearToActivityCount(Set<Activity>) - Static method in class edu.cornell.mannlib.vitro.webapp.visualization.visutils.UtilityFunctions
getYearToActivityCount(Collection<Activity>) - Static method in class edu.cornell.mannlib.vitro.webapp.visualization.visutils.UtilityFunctions
getYearToEntityCountDataTable() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.SparklineData
getYearToEntityCounter() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.YearToEntityCountDataElement
given - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel.NameField
given - Variable in class org.vivoweb.webapp.createandlink.crossref.CrossrefCiteprocJSONModel.NameField
given - Variable in class org.vivoweb.webapp.createandlink.ResourceModel.NameField
GRANT_END_DATE - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.constants.QueryFieldLabels
GRANT_LABEL - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.constants.QueryFieldLabels
GRANT_START_DATE - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.constants.QueryFieldLabels
GRANT_TEMPORAL_VIS_SHORT_URL - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants
GRANT_URL - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.constants.QueryFieldLabels
GrantAdministeredByGenerator - Class in edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators
GrantAdministeredByGenerator() - Constructor for class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.GrantAdministeredByGenerator
GrantChecker - Class in edu.cornell.mannlib.vivo.auth.policy: Does the requested action involve a change to a Grant that the self-editor is authorized to modify?
GrantChecker(AbstractPropertyStatementAction) - Constructor for class edu.cornell.mannlib.vivo.auth.policy.GrantChecker
GrantHasContributorGenerator - Class in edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators
GrantHasContributorGenerator() - Constructor for class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.GrantHasContributorGenerator
grantToRoleYear - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.utilities.VisualizationCaches: Grant to year of start in role (grant uri -> year)
grantToYear - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.utilities.VisualizationCaches: Grant to year (grant uri -> year)

H

handleMalformedParameters(String, String, VitroRequest) - Static method in class edu.cornell.mannlib.vitro.webapp.visualization.visutils.UtilityFunctions
handleMalformedParameters(String, HttpServletResponse, Log) - Static method in class edu.cornell.mannlib.vitro.webapp.visualization.visutils.UtilityFunctions
HIGHEST_LEVEL_ORGANIZATION_VIS_MODE - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants
HomePageAjaxController - Class in edu.cornell.mannlib.vitro.webapp.controller.ajax: Handle the AJAX functions that are specific to the "new" home page sections, at this point just the mapping of geographic locations.
HomePageAjaxController() - Constructor for class edu.cornell.mannlib.vitro.webapp.controller.ajax.HomePageAjaxController
HttpReader - Class in org.vivoweb.webapp.createandlink.utils
HttpReader() - Constructor for class org.vivoweb.webapp.createandlink.utils.HttpReader

I

i18nSetup - Class in org.vivoweb.webapp.startup: Configures VIVO to look for i18n properties files prefixed with 'vivo_'.
i18nSetup() - Constructor for class org.vivoweb.webapp.startup.i18nSetup
id - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
id - Variable in class org.vivoweb.webapp.createandlink.crossref.CrossrefCiteprocJSONModel
IllegalConstructedModelIdentifierException - Exception in edu.cornell.mannlib.vitro.webapp.visualization.exceptions
IllegalConstructedModelIdentifierException(String) - Constructor for exception edu.cornell.mannlib.vitro.webapp.visualization.exceptions.IllegalConstructedModelIdentifierException
IllegalConstructedModelIdentifierException(Exception) - Constructor for exception edu.cornell.mannlib.vitro.webapp.visualization.exceptions.IllegalConstructedModelIdentifierException
illustrator - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
IMAGE_UTILS_VIS_MODE - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants
IMAGE_VIS_MODE - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants
includeRequiredSystemData(ServletContext, Map<String, Object>) - Method in class edu.cornell.mannlib.vitro.webapp.utils.menuManagement.VIVOMenuManagementDataUtils
Individual - Class in edu.cornell.mannlib.vitro.webapp.visualization.valueobjects
Individual(String, String) - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Individual
Individual(String) - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Individual
INDIVIDUAL_URI_KEY - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants
INDIVIDUAL_URL_PREFIX - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants
individualsForClassesInternalQueryString - Static variable in class edu.cornell.mannlib.vitro.webapp.utils.dataGetter.InternalClassesDataGetter
infoContentEntity() - Method in class edu.cornell.mannlib.vitro.webapp.web.templatemodels.individual.VIVOIndividualTemplateModel
InfoContentEntityChecker - Class in edu.cornell.mannlib.vivo.auth.policy: Does the requested action involve a change to an Info Content Entity that the self-editor is authorized to modify?
InfoContentEntityChecker(AbstractPropertyStatementAction) - Constructor for class edu.cornell.mannlib.vivo.auth.policy.InfoContentEntityChecker
init(ServletConfig) - Method in class org.vivoweb.webapp.controller.freemarker.CreateAndLinkResourceController
initializeEdgeSchema() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.collaborationutils.CoAuthorshipData
initializeEdgeSchema() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.collaborationutils.CoInvestigationData
initializeNodeSchema() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.collaborationutils.CoAuthorshipData
initializeNodeSchema() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.collaborationutils.CoInvestigationData
InstitutionalInternalClassController - Class in edu.cornell.mannlib.vitro.webapp.controller.freemarker
InstitutionalInternalClassController() - Constructor for class edu.cornell.mannlib.vitro.webapp.controller.freemarker.InstitutionalInternalClassController
InternalClassesDataGetter - Class in edu.cornell.mannlib.vitro.webapp.utils.dataGetter: This will pass these variables to the template: classGroupUri: uri of the classgroup associated with this page.
InternalClassesDataGetter(VitroRequest, Model, String) - Constructor for class edu.cornell.mannlib.vitro.webapp.utils.dataGetter.InternalClassesDataGetter: Constructor with display model and data getter URI that will be called by reflection.
interviewer - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
isAuthorized(List<String>) - Method in class edu.cornell.mannlib.vivo.auth.policy.AdvisingRelationshipChecker: A self-editor is authorized to add, edit, or delete a statement if the subject or object refers to an Advising Relationship, and if the self-editor: 1) is an Advisor in that Relationship
isAuthorized(List<String>) - Method in class edu.cornell.mannlib.vivo.auth.policy.CourseChecker: A self-editor is authorized to add, edit, or delete a statement if the subject or object refers to a Course, and if the self-editor: 1) is a Teacher of that Course
isAuthorized(List<String>) - Method in class edu.cornell.mannlib.vivo.auth.policy.GrantChecker: A self-editor is authorized to add, edit, or delete a statement if the subject or object refers to a Grant, and if the self-editor: 1) is a Principal Investigator (PI) of that Grant, or 2) is a co-Principal Investigator (co-PI) of that Grant
isAuthorized(List<String>) - Method in class edu.cornell.mannlib.vivo.auth.policy.InfoContentEntityChecker: A self-editor is authorized to add, edit, or delete a statement if the subject or object refers to an Info Content Entity, and if the self-editor: 1) is an Author of that Info Content Entity, 2) is an Editor of that Info Content Entity, or 3) is Featured in that Info Content Entity.
isAuthorized(List<String>) - Method in class edu.cornell.mannlib.vivo.auth.policy.PresentationChecker: A self-editor is authorized to add, edit, or delete a statement if the subject or object refers to a Presentation, and if the self-editor: 1) is a Presenter of that Presentation
isAuthorized(List<String>) - Method in class edu.cornell.mannlib.vivo.auth.policy.ProjectOrServiceChecker: A self-editor is authorized to add, edit, or delete a statement if the subject or object refers to a Project or a Service, and if the self-editor: 1) is a Clinical Agent of that Project or Service
isAuthorized(IdentifierBundle, RequestedAction) - Method in class edu.cornell.mannlib.vivo.auth.policy.SelfEditorRelationshipPolicy
ISBN - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
ISBN - Variable in class org.vivoweb.webapp.createandlink.crossref.CrossrefCiteprocJSONModel
ISBN - Variable in class org.vivoweb.webapp.createandlink.ResourceModel
isCached() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.utilities.CachingRDFServiceExecutor
isConfigured() - Method in class edu.cornell.mannlib.semservices.service.impl.UMLSService
isEntityAPerson(VitroRequest, String) - Static method in class edu.cornell.mannlib.vitro.webapp.visualization.visutils.UtilityFunctions
isPersonType(VitroRequest, EditConfigurationVTwo) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.ManageLabelsForPersonGenerator
isPersonType(VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.VIVODefaultAddMissingIndividualFormGenerator
isPersonType(String, VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.VIVOManageLabelsGenerator
isPersonType(VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.VIVONewIndividualFormGenerator
isResourceOfType(Resource, String) - Method in class org.vivoweb.webapp.controller.freemarker.CreateAndLinkResourceController: Check that the resource is declared to be of a particular type
isShortVisMode() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.SparklineData
isShowRoleLabelField(VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddGrantRoleToPersonGenerator: Methods with default values that may be overwritten when required by a subclass Both Default value and method that can be overwritten are included below
isShowRoleLabelField() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddReviewerRoleToPersonGenerator
ISSN - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
ISSN - Variable in class org.vivoweb.webapp.createandlink.crossref.CrossrefCiteprocJSONModel
ISSN - Variable in class org.vivoweb.webapp.createandlink.ResourceModel
issue - Variable in class org.vivoweb.webapp.createandlink.Citation
issue - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
issue - Variable in class org.vivoweb.webapp.createandlink.crossref.CrossrefCiteprocJSONModel
issue - Variable in class org.vivoweb.webapp.createandlink.ResourceModel
issued - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
issued - Variable in class org.vivoweb.webapp.createandlink.crossref.CrossrefCiteprocJSONModel
itemToRolePredicate - Static variable in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.preprocessors.RoleToPredicatePreprocessor
itemType - Static variable in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.preprocessors.RoleToPredicatePreprocessor

J

journal - Variable in class org.vivoweb.webapp.createandlink.Citation
journalAbbreviation - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
JSON_OUTPUT_FORMAT - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants
JsonObject - Class in edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.json: JsonObject is used for creating data in JSON format, by just using the fields that are required to be included.
JsonObject(String) - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.json.JsonObject
JSONWrapperSetup - Class in org.vivoweb.webapp.startup
JSONWrapperSetup() - Constructor for class org.vivoweb.webapp.startup.JSONWrapperSetup
jurisdiction - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel

K

keyword - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
keyword - Variable in class org.vivoweb.webapp.createandlink.ResourceModel

L

LabelInformation(Literal, String, String, String, String) - Constructor for class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.ManageLabelsForPersonGenerator.LabelInformation
LabelInformationComparator() - Constructor for class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.ManageLabelsForPersonGenerator.LabelInformationComparator
LabelsAcrossContextNodes - Class in edu.cornell.mannlib.vitro.webapp.searchindex.extensions: If an individual has context nodes then the search document for that individual should include the labels of the partners across those nodes.
LabelsAcrossContextNodes() - Constructor for class edu.cornell.mannlib.vitro.webapp.searchindex.extensions.LabelsAcrossContextNodes
language - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
language - Variable in class org.vivoweb.webapp.createandlink.crossref.CrossrefCiteprocJSONModel
LAST_CACHED_AT_DATETIME - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.constants.QueryFieldLabels
lastName - Variable in class edu.cornell.mannlib.vitro.webapp.visualization.model.Person
LCSHService - Class in edu.cornell.mannlib.semservices.service.impl
LCSHService() - Constructor for class edu.cornell.mannlib.semservices.service.impl.LCSHService
linked - Variable in class org.vivoweb.webapp.createandlink.Citation.Name
literal - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel.DateField
literal - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel.NameField
literal - Variable in class org.vivoweb.webapp.createandlink.crossref.CrossrefCiteprocJSONModel.DateField
literal - Variable in class org.vivoweb.webapp.createandlink.crossref.CrossrefCiteprocJSONModel.NameField
locator - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
log - Variable in class edu.cornell.mannlib.semservices.service.impl.LCSHService
log - Static variable in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddAuthorsToInformationResourceGenerator
log - Static variable in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddEditorsToInformationResourceGenerator
log - Static variable in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddEditWebpageFormGenerator
log - Static variable in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.ManageLabelsForPersonGenerator
log - Static variable in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.ManageWebpagesForIndividualGenerator
log - Static variable in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.VIVOManageLabelsGenerator
log - Static variable in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.preprocessors.AddAssociatedConceptsPreprocessor
log - Static variable in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.preprocessors.RoleToPredicatePreprocessor
logger - Variable in class edu.cornell.mannlib.semservices.service.impl.AgrovocService
logger - Variable in class edu.cornell.mannlib.semservices.service.impl.GemetService
logger - Variable in class edu.cornell.mannlib.semservices.service.impl.UMLSService
logger - Variable in class org.vivoweb.webapp.createandlink.crossref.CrossrefResolverAPI
logger - Variable in class org.vivoweb.webapp.createandlink.pubmed.PubMedCreateAndLinkResourceProvider
lowerLabelToConcepts - Variable in class edu.cornell.mannlib.vitro.webapp.visualization.model.ConceptLabelMap

M

main(String[]) - Static method in class edu.cornell.mannlib.vitro.webapp.utilities.Describe
makeResourceModel(String, String) - Method in interface org.vivoweb.webapp.createandlink.CreateAndLinkResourceProvider
makeResourceModel(String, String) - Method in class org.vivoweb.webapp.createandlink.crossref.CrossrefCreateAndLinkResourceProvider: Create an internmediate model of the external resource (JSON string)
makeResourceModel(String) - Method in class org.vivoweb.webapp.createandlink.crossref.CrossrefNativeAPI: Create a full resource model from the external resource (JSON)
makeResourceModel(String) - Method in class org.vivoweb.webapp.createandlink.crossref.CrossrefResolverAPI
makeResourceModel(String, String) - Method in class org.vivoweb.webapp.createandlink.pubmed.PubMedCreateAndLinkResourceProvider
MalformedQueryParametersException - Exception in edu.cornell.mannlib.vitro.webapp.visualization.exceptions
MalformedQueryParametersException(String) - Constructor for exception edu.cornell.mannlib.vitro.webapp.visualization.exceptions.MalformedQueryParametersException
MalformedQueryParametersException(Exception) - Constructor for exception edu.cornell.mannlib.vitro.webapp.visualization.exceptions.MalformedQueryParametersException
ManageGrantsForIndividualController - Class in edu.cornell.mannlib.vitro.webapp.controller.freemarker
ManageGrantsForIndividualController() - Constructor for class edu.cornell.mannlib.vitro.webapp.controller.freemarker.ManageGrantsForIndividualController
ManageLabelsForPersonGenerator - Class in edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators: This generator is specifically for handling labels for a FOAF Person individual and is an object property form.
ManageLabelsForPersonGenerator() - Constructor for class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.ManageLabelsForPersonGenerator
ManageLabelsForPersonGenerator.LabelInformation - Class in edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators
ManageLabelsForPersonGenerator.LabelInformationComparator - Class in edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators
ManageLabelsForPersonPreprocessor - Class in edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.preprocessors
ManageLabelsForPersonPreprocessor(EditConfigurationVTwo) - Constructor for class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.preprocessors.ManageLabelsForPersonPreprocessor
ManagePeopleForOrganizationController - Class in edu.cornell.mannlib.vitro.webapp.controller.freemarker
ManagePeopleForOrganizationController() - Constructor for class edu.cornell.mannlib.vitro.webapp.controller.freemarker.ManagePeopleForOrganizationController
ManagePublicationsForIndividualController - Class in edu.cornell.mannlib.vitro.webapp.controller.freemarker
ManagePublicationsForIndividualController() - Constructor for class edu.cornell.mannlib.vitro.webapp.controller.freemarker.ManagePublicationsForIndividualController
manager - Variable in class edu.cornell.mannlib.vivo.orcid.controller.OrcidAbstractHandler
ManageWebpagesForIndividualGenerator - Class in edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators: This is an odd controller that is just drawing a page with links on it.
ManageWebpagesForIndividualGenerator() - Constructor for class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.ManageWebpagesForIndividualGenerator
MAP_OF_SCIENCE_VIS_SHORT_URL - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants
MapOfScience - Class in edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.json
MapOfScience(String) - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.json.MapOfScience
MapOfScienceActivity - Class in edu.cornell.mannlib.vitro.webapp.visualization.valueobjects
MapOfScienceActivity(String) - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.MapOfScienceActivity
MapOfScienceConstants - Class in edu.cornell.mannlib.vitro.webapp.visualization.constants: This contains the constants related to map of science visualization.
MapOfScienceConstants() - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.constants.MapOfScienceConstants
mapOfScienceUrl() - Method in class edu.cornell.mannlib.vitro.webapp.web.templatemodels.individual.VIVOIndividualTemplateModel
MapOfScienceVisualizationRequestHandler - Class in edu.cornell.mannlib.vitro.webapp.visualization.mapofscience
MapOfScienceVisualizationRequestHandler() - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.mapofscience.MapOfScienceVisualizationRequestHandler
MAX_NAME_TEXT_LENGTH - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.constants.VisConstants
maximumMultipartFileSize() - Method in class edu.cornell.mannlib.vitro.webapp.controller.harvester.FileHarvestController
medium - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
MenuManagementSetup - Class in org.vivoweb.webapp.startup
MenuManagementSetup() - Constructor for class org.vivoweb.webapp.startup.MenuManagementSetup
mergeEntityIfShareSameURI(Entity, Entity) - Static method in class edu.cornell.mannlib.vitro.webapp.visualization.temporalgraph.OrganizationUtilityFunctions
MINIMUM_PUBLICATION_YEAR - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.constants.VOConstants
MINIMUM_YEARS_CONSIDERED_FOR_SPARKLINE - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.constants.VisConstants
MODEL_TYPE - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.modelconstructor.PersonToGrantsModelConstructor
MODEL_TYPE_HUMAN_READABLE - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.modelconstructor.PersonToGrantsModelConstructor
ModelConstructor - Interface in edu.cornell.mannlib.vitro.webapp.visualization.visutils
ModelConstructorRequestHandler - Class in edu.cornell.mannlib.vitro.webapp.visualization.modelconstructor
ModelConstructorRequestHandler() - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.modelconstructor.ModelConstructorRequestHandler
ModelConstructorUtilities - Class in edu.cornell.mannlib.vitro.webapp.visualization.modelconstructor
ModelConstructorUtilities() - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.modelconstructor.ModelConstructorUtilities
ModelFactoryInterface - Interface in edu.cornell.mannlib.vitro.webapp.visualization.modelconstructor.factory
modelTypeToHumanReadableName - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.modelconstructor.ModelConstructorUtilities: Deprecated.
ModelUtils - Class in org.vivoweb.webapp.util
ModelUtils() - Constructor for class org.vivoweb.webapp.util.ModelUtils
modifyDocument(Individual, SearchInputDocument) - Method in class edu.cornell.mannlib.vitro.webapp.searchindex.documentBuilding.CalculateParameters
modifyDocument(Individual, SearchInputDocument) - Method in class edu.cornell.mannlib.vitro.webapp.searchindex.extensions.LabelsAcrossContextNodes: If this individual is acceptable, locate the labels of any context partners across acceptable context nodes.
month - Variable in class org.vivoweb.webapp.createandlink.ResourceModel.DateField

N

N3TransitionToV2Mapping - Class in edu.cornell.mannlib.vitro.webapp.edit.n3editing
N3TransitionToV2Mapping() - Constructor for class edu.cornell.mannlib.vitro.webapp.edit.n3editing.N3TransitionToV2Mapping
Name() - Constructor for class org.vivoweb.webapp.createandlink.Citation.Name
name - Variable in class org.vivoweb.webapp.createandlink.Citation.Name
NameField() - Constructor for class org.vivoweb.webapp.createandlink.CiteprocJSONModel.NameField
NameField() - Constructor for class org.vivoweb.webapp.createandlink.crossref.CrossrefCiteprocJSONModel.NameField
NameField() - Constructor for class org.vivoweb.webapp.createandlink.ResourceModel.NameField
nonDroppingParticle - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel.NameField
normalize(String) - Method in interface org.vivoweb.webapp.createandlink.CreateAndLinkResourceProvider
normalize(String) - Method in class org.vivoweb.webapp.createandlink.crossref.CrossrefCreateAndLinkResourceProvider: Make a normalized version of the ID
normalize(String) - Method in class org.vivoweb.webapp.createandlink.pubmed.PubMedCreateAndLinkResourceProvider
note - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
note - Variable in class org.vivoweb.webapp.createandlink.crossref.CrossrefCiteprocJSONModel
NUM_CHARS_IN_YEAR_FORMAT - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.constants.VOConstants
number - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
number - Variable in class org.vivoweb.webapp.createandlink.crossref.CrossrefCiteprocJSONModel
numberOfPages - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
numberOfVolumes - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel

O

OBJECT - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.constants.QueryFieldLabels
OBO_BEARER_OF - Static variable in class org.vivoweb.webapp.controller.freemarker.CreateAndLinkResourceController
OBO_CONTACT_INFO_FOR - Static variable in class org.vivoweb.webapp.controller.freemarker.CreateAndLinkResourceController
OBO_HAS_CONTACT_INFO - Static variable in class org.vivoweb.webapp.controller.freemarker.CreateAndLinkResourceController
OBO_INHERES_IN - Static variable in class org.vivoweb.webapp.controller.freemarker.CreateAndLinkResourceController
occ - Variable in class edu.cornell.mannlib.vivo.orcid.controller.OrcidAbstractHandler
ontModel - Variable in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.preprocessors.AddAssociatedConceptsPreprocessor
ORCID_ID - Static variable in class edu.cornell.mannlib.vivo.orcid.OrcidIdDataGetter
ORCID_IS_CONFIRMED - Static variable in class edu.cornell.mannlib.vivo.orcid.OrcidIdDataGetter
OrcidAbstractHandler - Class in edu.cornell.mannlib.vivo.orcid.controller: Some utility methods for the handlers.
OrcidAbstractHandler(VitroRequest) - Constructor for class edu.cornell.mannlib.vivo.orcid.controller.OrcidAbstractHandler
OrcidAddExternalIdHandler - Class in edu.cornell.mannlib.vivo.orcid.controller: We should now be logged in to ORCID and authorized to add an external ID.
OrcidAddExternalIdHandler(VitroRequest) - Constructor for class edu.cornell.mannlib.vivo.orcid.controller.OrcidAddExternalIdHandler
OrcidAuthAuthenticateHandler - Class in edu.cornell.mannlib.vivo.orcid.controller: We offered the confirmation screen, and they decided to go ahead.
OrcidAuthAuthenticateHandler(VitroRequest) - Constructor for class edu.cornell.mannlib.vivo.orcid.controller.OrcidAuthAuthenticateHandler
OrcidAuthExternalIdsHandler - Class in edu.cornell.mannlib.vivo.orcid.controller: We offered to add external IDs and they decided to go ahead.
OrcidAuthExternalIdsHandler(VitroRequest) - Constructor for class edu.cornell.mannlib.vivo.orcid.controller.OrcidAuthExternalIdsHandler
OrcidCallbackHandler - Class in edu.cornell.mannlib.vivo.orcid.controller: Handle the callbacks during the OAuth dance.
OrcidCallbackHandler(HttpServletRequest, HttpServletResponse) - Constructor for class edu.cornell.mannlib.vivo.orcid.controller.OrcidCallbackHandler
OrcidContextSetup - Class in edu.cornell.mannlib.vivo.orcid: Setup for the ORCID interface.
OrcidContextSetup() - Constructor for class edu.cornell.mannlib.vivo.orcid.OrcidContextSetup
OrcidDefaultHandler - Class in edu.cornell.mannlib.vivo.orcid.controller: A request came from the "Confirm" button on the individual profile.
OrcidDefaultHandler(VitroRequest) - Constructor for class edu.cornell.mannlib.vivo.orcid.controller.OrcidDefaultHandler
OrcidIdDataGetter - Class in edu.cornell.mannlib.vivo.orcid: This data getter should be assigned to the template that renders the list view for ORCID IDs.
OrcidIdDataGetter(VitroRequest) - Constructor for class edu.cornell.mannlib.vivo.orcid.OrcidIdDataGetter
OrcidIllegalStateException - Exception in edu.cornell.mannlib.vivo.orcid.controller: The OrcidConfirmationState is not as we expected.
OrcidIllegalStateException(String) - Constructor for exception edu.cornell.mannlib.vivo.orcid.controller.OrcidIllegalStateException
OrcidIllegalStateException(String, Throwable) - Constructor for exception edu.cornell.mannlib.vivo.orcid.controller.OrcidIllegalStateException
OrcidIntegrationController - Class in edu.cornell.mannlib.vivo.orcid.controller: New workflow:
OrcidIntegrationController() - Constructor for class edu.cornell.mannlib.vivo.orcid.controller.OrcidIntegrationController
OrcidReadProfileHandler - Class in edu.cornell.mannlib.vivo.orcid.controller: We should now know the user's ORCID, so read the user's public ORCID profile.
OrcidReadProfileHandler(VitroRequest) - Constructor for class edu.cornell.mannlib.vivo.orcid.controller.OrcidReadProfileHandler
org.vivoweb.reasoner.plugin - package org.vivoweb.reasoner.plugin
org.vivoweb.webapp.controller.freemarker - package org.vivoweb.webapp.controller.freemarker
org.vivoweb.webapp.createandlink - package org.vivoweb.webapp.createandlink
org.vivoweb.webapp.createandlink.crossref - package org.vivoweb.webapp.createandlink.crossref
org.vivoweb.webapp.createandlink.pubmed - package org.vivoweb.webapp.createandlink.pubmed
org.vivoweb.webapp.createandlink.utils - package org.vivoweb.webapp.createandlink.utils
org.vivoweb.webapp.sitemap - package org.vivoweb.webapp.sitemap
org.vivoweb.webapp.startup - package org.vivoweb.webapp.startup
org.vivoweb.webapp.util - package org.vivoweb.webapp.util
organisationToPeopleMap - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.utilities.VisualizationCaches: Map of people within an organisation (org uri -> list of person uri)
organization() - Method in class edu.cornell.mannlib.vitro.webapp.web.templatemodels.individual.VIVOIndividualTemplateModel
ORGANIZATION_LABEL - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.constants.QueryFieldLabels
ORGANIZATION_URL - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.constants.QueryFieldLabels
OrganizationAdministersGrantGenerator - Class in edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators
OrganizationAdministersGrantGenerator() - Constructor for class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.OrganizationAdministersGrantGenerator
OrganizationForTrainingGenerator - Class in edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators
OrganizationForTrainingGenerator() - Constructor for class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.OrganizationForTrainingGenerator
OrganizationHasPositionHistoryGenerator - Class in edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators
OrganizationHasPositionHistoryGenerator() - Constructor for class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.OrganizationHasPositionHistoryGenerator
organizationLabels - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.utilities.VisualizationCaches: Cache of organization labels (uri -> label)
OrganizationPeopleMap - Class in edu.cornell.mannlib.vitro.webapp.visualization.model
OrganizationPeopleMap() - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.model.OrganizationPeopleMap
organizationSubOrgs - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.utilities.VisualizationCaches: Cache of organization to sub organizations (uri -> list of uris)
organizationToMostSpecificLabel - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.utilities.VisualizationCaches: Organization most specific type label (uri -> string)
organizationToPeople - Variable in class edu.cornell.mannlib.vitro.webapp.visualization.model.OrganizationPeopleMap
OrganizationUtilityFunctions - Class in edu.cornell.mannlib.vitro.webapp.visualization.temporalgraph
OrganizationUtilityFunctions() - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.temporalgraph.OrganizationUtilityFunctions
OrgUtils - Class in edu.cornell.mannlib.vitro.webapp.visualization.utilities
OrgUtils() - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.utilities.OrgUtils
originalAuthor - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
originalDate - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
originalPublisher - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
originalPublisherPlace - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
originalTitle - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
OUTPUT_FORMAT_KEY - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants

P

page - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
page - Variable in class org.vivoweb.webapp.createandlink.crossref.CrossrefCiteprocJSONModel
pageEnd - Variable in class org.vivoweb.webapp.createandlink.ResourceModel
pageFirst - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
pageStart - Variable in class org.vivoweb.webapp.createandlink.ResourceModel
pagination - Variable in class org.vivoweb.webapp.createandlink.Citation
PARENT_ORGANIZATION_LABEL - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.constants.QueryFieldLabels
PARENT_ORGANIZATION_URL - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.constants.QueryFieldLabels
parseModelIdentifier(String) - Static method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.ConstructedModelTracker
parseNames - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel.NameField
PATH_DEFAULT - Static variable in class edu.cornell.mannlib.vivo.orcid.controller.OrcidIntegrationController
PATH_TO_HARVESTED_DATA - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.harvester.FileHarvestController: Relative path from the Harvester root directory to the directory containing the script templates.
PATH_TO_HARVESTER_SCRIPTS - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.harvester.FileHarvestController: Relative path from the Harvester root directory to the directory containing the script templates.
PATH_TO_TEMPLATE_FILES - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.harvester.FileHarvestController: Relative path from the Harvester root directory to the directory where user-downloadable template files are stored.
PDF_RENDER_MODE - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants
PDF_REPORT_VIS - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants
PDFDocument - Class in edu.cornell.mannlib.vitro.webapp.visualization.visutils
PDFDocument(String, Map<String, Integer>, Document, PdfWriter) - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.visutils.PDFDocument
people - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.utilities.VisualizationCaches: Cache of people
Person - Class in edu.cornell.mannlib.vitro.webapp.visualization.model
Person() - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.model.Person
person() - Method in class edu.cornell.mannlib.vitro.webapp.web.templatemodels.individual.VIVOIndividualTemplateModel
PERSON_GRANT_COUNT_VIS - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants
PERSON_LABEL - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.constants.QueryFieldLabels
PERSON_LEVEL_UTILS_VIS_MODE - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants
PERSON_LEVEL_VIS - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants
PERSON_PUBLICATION_COUNT_VIS - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants
PERSON_TYPE - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.constants.QueryFieldLabels
PERSON_TYPE_LABEL - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.constants.QueryFieldLabels
PERSON_URL - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.constants.QueryFieldLabels
PersonGrantCountQueryRunner - Class in edu.cornell.mannlib.vitro.webapp.visualization.persongrantcount: This query runner is used to execute a sparql query that will fetch all the publications defined by bibo:Document property for a particular individual.
PersonGrantCountQueryRunner(String, RDFService, Log) - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.persongrantcount.PersonGrantCountQueryRunner
PersonGrantCountRequestHandler - Class in edu.cornell.mannlib.vitro.webapp.visualization.persongrantcount: This request handler is used to serve the content related to an individual's grants over the years like, 1.
PersonGrantCountRequestHandler() - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.persongrantcount.PersonGrantCountRequestHandler
PersonGrantCountVisCodeGenerator - Class in edu.cornell.mannlib.vitro.webapp.visualization.persongrantcount
PersonGrantCountVisCodeGenerator(String, String, String, Map<String, Integer>, Log) - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.persongrantcount.PersonGrantCountVisCodeGenerator
PersonHasAdviseeRelationshipGenerator - Class in edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators
PersonHasAdviseeRelationshipGenerator() - Constructor for class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.PersonHasAdviseeRelationshipGenerator
PersonHasAdvisorRelationshipGenerator - Class in edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators
PersonHasAdvisorRelationshipGenerator() - Constructor for class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.PersonHasAdvisorRelationshipGenerator
PersonHasAwardOrHonorGenerator - Class in edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators
PersonHasAwardOrHonorGenerator() - Constructor for class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.PersonHasAwardOrHonorGenerator
PersonHasEducationalTraining - Class in edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators: Form for adding an educational attainment to an individual Classes: core:EducationalProcess - primary new individual being created foaf:Person - existing individual foaf:Organization - new or existing individual core:AcademicDegree - existing individual core:AwardedDegree - new or existing individual There are 4 modes that this form can be in: 1.
PersonHasEducationalTraining() - Constructor for class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.PersonHasEducationalTraining
PersonHasEmailGenerator - Class in edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators
PersonHasEmailGenerator() - Constructor for class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.PersonHasEmailGenerator
PersonHasIssuedCredentialGenerator - Class in edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators
PersonHasIssuedCredentialGenerator() - Constructor for class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.PersonHasIssuedCredentialGenerator
PersonHasPositionHistoryGenerator - Class in edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators
PersonHasPositionHistoryGenerator() - Constructor for class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.PersonHasPositionHistoryGenerator
PersonHasPreferredTitleGenerator - Class in edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators
PersonHasPreferredTitleGenerator() - Constructor for class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.PersonHasPreferredTitleGenerator
PersonHasPublicationValidator - Class in edu.cornell.mannlib.vitro.webapp.edit.n3editing
PersonHasPublicationValidator() - Constructor for class edu.cornell.mannlib.vitro.webapp.edit.n3editing.PersonHasPublicationValidator
personLabels - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.utilities.VisualizationCaches: Display labels for people (uri -> label)
PersonLevelRequestHandler - Class in edu.cornell.mannlib.vitro.webapp.visualization.personlevel: This request handler is used to serve content rendered on the person level vis page like, 1.
PersonLevelRequestHandler() - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.personlevel.PersonLevelRequestHandler
PersonPublicationCountQueryRunner - Class in edu.cornell.mannlib.vitro.webapp.visualization.personpubcount: This query runner is used to execute a sparql query that will fetch all the publications defined by bibo:Document property for a particular individual.
PersonPublicationCountQueryRunner(String, RDFService, Log) - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.personpubcount.PersonPublicationCountQueryRunner
PersonPublicationCountRequestHandler - Class in edu.cornell.mannlib.vitro.webapp.visualization.personpubcount: This request handler is used to serve the content related to an individual's publications over the years like, 1.
PersonPublicationCountRequestHandler() - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.personpubcount.PersonPublicationCountRequestHandler
PersonPublicationCountVisCodeGenerator - Class in edu.cornell.mannlib.vitro.webapp.visualization.personpubcount
PersonPublicationCountVisCodeGenerator(String, String, String, Map<String, Integer>, Log) - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.personpubcount.PersonPublicationCountVisCodeGenerator
PersonPublicationMaps - Class in edu.cornell.mannlib.vitro.webapp.visualization.utilities
PersonPublicationMaps() - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.utilities.PersonPublicationMaps
personToConcepts - Variable in class edu.cornell.mannlib.vitro.webapp.visualization.model.ConceptPeopleMap
personToGrant - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.utilities.VisualizationCaches: Person to grant (person uri -> grant uri)
PersonToGrantsModelConstructor - Class in edu.cornell.mannlib.vitro.webapp.visualization.modelconstructor
PersonToGrantsModelConstructor(String, RDFService) - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.modelconstructor.PersonToGrantsModelConstructor
personToMostSpecificLabel - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.utilities.VisualizationCaches: Most specific type for person (uri -> label)
personToOrganizations - Variable in class edu.cornell.mannlib.vitro.webapp.visualization.model.OrganizationPeopleMap
personToPublication - Variable in class edu.cornell.mannlib.vitro.webapp.visualization.utilities.PersonPublicationMaps
personToPublication - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.utilities.VisualizationCaches: Person to publication Map (person uri -> list of publication uri)
PI_LABEL - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.constants.QueryFieldLabels
PI_URL - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.constants.QueryFieldLabels
pictureBackdrop(float, float, PdfContentByte) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.visutils.PDFDocument: Prints a square and fills half of it with a gray rectangle.
pictureCircles(float, float, PdfContentByte) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.visutils.PDFDocument: Prints 3 circles in different colors that intersect with eachother.
PMCID - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
PMCID - Variable in class org.vivoweb.webapp.createandlink.crossref.CrossrefCiteprocJSONModel
PMID - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
PMID - Variable in class org.vivoweb.webapp.createandlink.crossref.CrossrefCiteprocJSONModel
populateExistingValues(String, int, OntModel) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.preprocessors.utils.ProcessInternalClassDataGetterN3
populateRestrictedClasses(Map<String, Object>, Map<String, Object>) - Method in class edu.cornell.mannlib.vitro.webapp.utils.menuManagement.ProcessInternalClasses: Retrieve and populate
POSSIBLE_DATE_TIME_FORMATTERS - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.constants.VOConstants
PREDICATE - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.constants.QueryFieldLabels
preferredTitle - Variable in class edu.cornell.mannlib.vitro.webapp.visualization.model.Person
prefix - Variable in class org.vivoweb.webapp.createandlink.crossref.CrossrefCiteprocJSONModel
PREFIX_TO_NAMESPACE - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.constants.QueryConstants
prepareResponse() - Method in class edu.cornell.mannlib.vitro.webapp.controller.ajax.GeoFocusMapLocations
prepareResponse() - Method in class edu.cornell.mannlib.vitro.webapp.controller.ajax.GeoFocusResearcherCount
prepareResponse() - Method in class edu.cornell.mannlib.vitro.webapp.controller.ajax.QrCodeDetails
preprocess(MultiValueEditSubmission, VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.preprocessors.AddAssociatedConceptsPreprocessor
preprocess(Model, Model, HttpServletRequest) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.preprocessors.ConceptSemanticTypesPreprocessor
preprocess(MultiValueEditSubmission, VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.preprocessors.ManageLabelsForPersonPreprocessor
preprocess(MultiValueEditSubmission, VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.preprocessors.RoleToPredicatePreprocessor
PresentationChecker - Class in edu.cornell.mannlib.vivo.auth.policy: Does the requested action involve a change to a Presentation that the self-editor is authorized to modify?
PresentationChecker(AbstractPropertyStatementAction) - Constructor for class edu.cornell.mannlib.vivo.auth.policy.PresentationChecker
presentedAt - Variable in class org.vivoweb.webapp.createandlink.ResourceModel
ProcessInternalClassDataGetterN3 - Class in edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.preprocessors.utils
ProcessInternalClassDataGetterN3() - Constructor for class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.preprocessors.utils.ProcessInternalClassDataGetterN3
ProcessInternalClasses - Class in edu.cornell.mannlib.vitro.webapp.utils.menuManagement
ProcessInternalClasses() - Constructor for class edu.cornell.mannlib.vitro.webapp.utils.menuManagement.ProcessInternalClasses
processRelationships(VitroRequest, Model, String, String, String) - Method in class org.vivoweb.webapp.controller.freemarker.CreateAndLinkResourceController: Adjust the in-memory model to create the appropriate relationships for the claimed user role (authorship, editorship, etc)
processRequest(VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.controller.AboutQrCodesController
processRequest(VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.controller.ExportQrCodeController
processRequest(VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.controller.freemarker.InstitutionalInternalClassController
processRequest(VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.controller.freemarker.ManageGrantsForIndividualController
processRequest(VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.controller.freemarker.ManagePeopleForOrganizationController
processRequest(VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.controller.freemarker.ManagePublicationsForIndividualController
processRequest(VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.controller.harvester.FileHarvestController
processRequest(VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.controller.visualization.ShortURLVisualizationController
processRequest(VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.controller.visualization.StandardVisualizationController
processRequest(VitroRequest) - Method in class edu.cornell.mannlib.vivo.orcid.controller.OrcidIntegrationController: Look at the path info and delegate to a handler.
processRequest(VitroRequest) - Method in class org.vivoweb.webapp.controller.freemarker.CreateAndLinkResourceController: Main method for the resource claiming (create and link) workflow
processResults(String) - Method in class edu.cornell.mannlib.semservices.service.impl.AgrovocService
processResults(String) - Method in class edu.cornell.mannlib.semservices.service.impl.GemetService
processResults(String) - Method in class edu.cornell.mannlib.semservices.service.impl.LCSHService
processResults(String) - Method in class edu.cornell.mannlib.semservices.service.impl.UMLSService
processSubmission(VitroRequest, Resource) - Method in class edu.cornell.mannlib.vitro.webapp.utils.menuManagement.ProcessInternalClasses
PROFILE_INFO_UTILS_VIS_MODE - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants
PROFILE_UTILS_VIS_MODE - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants
ProjectHasParticipantGenerator - Class in edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators
ProjectHasParticipantGenerator() - Constructor for class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.ProjectHasParticipantGenerator
ProjectOrServiceChecker - Class in edu.cornell.mannlib.vivo.auth.policy: Does the requested action involve a change to a Project or Service that the self-editor is authorized to modify?
ProjectOrServiceChecker(AbstractPropertyStatementAction) - Constructor for class edu.cornell.mannlib.vivo.auth.policy.ProjectOrServiceChecker
PROPERTY_EXTERNAL_ID_COMMON_NAME - Static variable in class edu.cornell.mannlib.vivo.orcid.controller.OrcidIntegrationController
proposeAuthorToLink(VitroRequest, Citation, String) - Method in class org.vivoweb.webapp.controller.freemarker.CreateAndLinkResourceController: Method to find an author to propose for linking
proposed - Variable in class org.vivoweb.webapp.createandlink.Citation.Name
PUBLICATION_TEMPORAL_VIS_SHORT_URL - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants
publicationDate - Variable in class org.vivoweb.webapp.createandlink.ResourceModel
PublicationHasAuthorValidator - Class in edu.cornell.mannlib.vitro.webapp.edit.n3editing
PublicationHasAuthorValidator() - Constructor for class edu.cornell.mannlib.vitro.webapp.edit.n3editing.PublicationHasAuthorValidator
publicationToJournal - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.utilities.VisualizationCaches: Publication to journal (publication uri -> journal label)
publicationToPerson - Variable in class edu.cornell.mannlib.vitro.webapp.visualization.utilities.PersonPublicationMaps
publicationToYear - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.utilities.VisualizationCaches: Publication to year (publication uri -> year)
PublicationType(String, String) - Constructor for class org.vivoweb.webapp.controller.freemarker.CreateAndLinkResourceController.PublicationType
publicationYear - Variable in class org.vivoweb.webapp.createandlink.Citation
publishedOnline - Variable in class org.vivoweb.webapp.createandlink.crossref.CrossrefCiteprocJSONModel
publishedPrint - Variable in class org.vivoweb.webapp.createandlink.crossref.CrossrefCiteprocJSONModel
publisher - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
publisher - Variable in class org.vivoweb.webapp.createandlink.crossref.CrossrefCiteprocJSONModel
publisher - Variable in class org.vivoweb.webapp.createandlink.ResourceModel
publisherPlace - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
PUBMED_ID_API - Static variable in class org.vivoweb.webapp.createandlink.pubmed.PubMedCreateAndLinkResourceProvider
PUBMED_SUMMARY_API - Static variable in class org.vivoweb.webapp.createandlink.pubmed.PubMedCreateAndLinkResourceProvider
PubMedCentralID - Variable in class org.vivoweb.webapp.createandlink.ExternalIdentifiers
PubMedCentralID - Variable in class org.vivoweb.webapp.createandlink.ResourceModel
PubMedCreateAndLinkResourceProvider - Class in org.vivoweb.webapp.createandlink.pubmed
PubMedCreateAndLinkResourceProvider() - Constructor for class org.vivoweb.webapp.createandlink.pubmed.PubMedCreateAndLinkResourceProvider
PubMedID - Variable in class org.vivoweb.webapp.createandlink.ExternalIdentifiers
PubMedID - Variable in class org.vivoweb.webapp.createandlink.ResourceModel
put(String, String) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.utilities.PersonPublicationMaps

Q

QrCodeAjaxController - Class in edu.cornell.mannlib.vitro.webapp.controller.ajax: Handle the AJAX functions that are specific to the "new" home page sections, at this point just the mapping of geographic locations.
QrCodeAjaxController() - Constructor for class edu.cornell.mannlib.vitro.webapp.controller.ajax.QrCodeAjaxController
QrCodeDetails - Class in edu.cornell.mannlib.vitro.webapp.controller.ajax
QrCodeDetails(HttpServlet, VitroRequest, HttpServletResponse) - Constructor for class edu.cornell.mannlib.vitro.webapp.controller.ajax.QrCodeDetails
QueryConstants - Class in edu.cornell.mannlib.vitro.webapp.visualization.constants
QueryConstants() - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.constants.QueryConstants
QueryFieldLabels - Class in edu.cornell.mannlib.vitro.webapp.visualization.constants: Thsi contains the sparql fields which are used to capture data for the value objects.
QueryFieldLabels() - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.constants.QueryFieldLabels
QueryRunner<QueryResult> - Interface in edu.cornell.mannlib.vitro.webapp.visualization.visutils

R

raw - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel.DateField
RDF_RESULT_FORMAT_PARAM - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.constants.VisConstants
RDFS_LABEL - Static variable in class org.vivoweb.webapp.controller.freemarker.CreateAndLinkResourceController
RDFServiceCallable() - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.utilities.CachingRDFServiceExecutor.RDFServiceCallable: Default constructor
RDFServiceCallable(CachingRDFServiceExecutor.Affinity) - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.utilities.CachingRDFServiceExecutor.RDFServiceCallable: Constructor that allows an affinity object to be supplied
rebuild(CachingRDFServiceExecutor...) - Static method in class edu.cornell.mannlib.vitro.webapp.visualization.utilities.VisualizationCaches: Rebuild the specifield caches
rebuildAll() - Static method in class edu.cornell.mannlib.vitro.webapp.visualization.utilities.VisualizationCaches: Rebuild all the caches
rebuildAll(RDFService) - Static method in class edu.cornell.mannlib.vitro.webapp.visualization.utilities.VisualizationCaches: Rebuild all the caches
recipient - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
recordConfirmation() - Method in class edu.cornell.mannlib.vivo.orcid.controller.OrcidAbstractHandler
references - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
register() - Static method in class edu.cornell.mannlib.vitro.webapp.web.templatemodels.searchresult.VIVOIndividualSearchResult
registerProviders(ConfigurationProperties) - Static method in class org.vivoweb.webapp.controller.freemarker.CreateAndLinkResourceController
RELATIVE_LOCATION_OF_FM_VISUALIZATIONS_BEAN - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants
RELATIVE_LOCATION_OF_VISUALIZATIONS_BEAN - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants
removeAuthorship(VitroRequest, Model, String, int) - Method in class org.vivoweb.webapp.controller.freemarker.CreateAndLinkResourceController: Removes an existing authorship at a given position, when that position is claimed by the author
removeModel(String, String) - Static method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.ConstructedModelTracker
removeVCard(Model, String) - Method in class org.vivoweb.webapp.controller.freemarker.CreateAndLinkResourceController: Attempt to remove a VCARD from VIVO, ensuring that it is not being used first
RENDER_MODE_KEY - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants
renderJson(ConceptInfo) - Method in class edu.cornell.mannlib.vitro.webapp.servlet.ConceptSearchServlet
REQUESTING_TEMPLATE_KEY - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants
REQUIRED_ACTIONS - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.freemarker.InstitutionalInternalClassController
REQUIRED_ACTIONS - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.modelconstructor.ModelConstructorRequestHandler
REQUIRED_ACTIONS - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.tools.ToolsRequestHandler
REQUIRED_ACTIONS - Static variable in class org.vivoweb.webapp.controller.freemarker.CreateAndLinkResourceController
requiredActions(VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.controller.freemarker.InstitutionalInternalClassController
requiredActions(VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.controller.freemarker.ManageGrantsForIndividualController
requiredActions(VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.controller.freemarker.ManagePeopleForOrganizationController
requiredActions(VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.controller.freemarker.ManagePublicationsForIndividualController
requiredActions(VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.controller.visualization.AjaxVisualizationController
requiredActions(VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.controller.visualization.ShortURLVisualizationController
requiredActions(VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.controller.visualization.StandardVisualizationController
requiredActions(VitroRequest) - Method in class edu.cornell.mannlib.vivo.orcid.controller.OrcidIntegrationController: We return AUTHORIZED here, but we want the LogoutRedirector to know that the user should not remain on this page after logging out.
requiredActions(VitroRequest) - Method in class org.vivoweb.webapp.controller.freemarker.CreateAndLinkResourceController: Ensure that we can only be called if the user has the correct permissions
ResourceModel - Class in org.vivoweb.webapp.createandlink
ResourceModel() - Constructor for class org.vivoweb.webapp.createandlink.ResourceModel
ResourceModel.DateField - Class in org.vivoweb.webapp.createandlink
ResourceModel.NameField - Class in org.vivoweb.webapp.createandlink
RESULT_FORMAT_PARAM - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.constants.VisConstants
retrieveFields(int) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.preprocessors.utils.ProcessInternalClassDataGetterN3
retrieveLiteralsOnForm(int) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.preprocessors.utils.ProcessInternalClassDataGetterN3
retrieveN3Optional(int) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.preprocessors.utils.ProcessInternalClassDataGetterN3
retrieveN3Required(int) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.preprocessors.utils.ProcessInternalClassDataGetterN3
retrieveRestrictClasses(ServletContext, Map<String, Object>) - Method in class edu.cornell.mannlib.vitro.webapp.utils.dataGetter.InternalClassesDataGetter
reviewedAuthor - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
reviewedTitle - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
ROLE_END_DATE - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.constants.QueryFieldLabels
ROLE_START_DATE - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.constants.QueryFieldLabels
RoleToActivityPredicatePreprocessor - Class in edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.preprocessors
RoleToActivityPredicatePreprocessor(EditConfigurationVTwo, WebappDaoFactory) - Constructor for class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.preprocessors.RoleToActivityPredicatePreprocessor
roleToItemPredicate - Static variable in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.preprocessors.RoleToPredicatePreprocessor
RoleToPredicatePreprocessor - Class in edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.preprocessors
RoleToPredicatePreprocessor(EditConfigurationVTwo, WebappDaoFactory) - Constructor for class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.preprocessors.RoleToPredicatePreprocessor

S

scale - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
scale - Variable in class org.vivoweb.webapp.createandlink.crossref.CrossrefCiteprocJSONModel
SCHOOL_COMPARISON_VIS_MODE - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants
SCIENCE_UNLOCATED_JOURNALS_VIS_MODE - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants
score - Variable in class org.vivoweb.webapp.createandlink.crossref.CrossrefCiteprocJSONModel
SearchResultTemplateModelSetup - Class in org.vivoweb.webapp.startup
SearchResultTemplateModelSetup() - Constructor for class org.vivoweb.webapp.startup.SearchResultTemplateModelSetup
season - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel.DateField
SECONDARY_POSITION_LABEL - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.constants.QueryFieldLabels
section - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
section - Variable in class org.vivoweb.webapp.createandlink.crossref.CrossrefCiteprocJSONModel
SelfEditorRelationshipPolicy - Class in edu.cornell.mannlib.vivo.auth.policy: Permit self-editors to edit the properties of classes with which they share a special relationship.
SelfEditorRelationshipPolicy(ServletContext) - Constructor for class edu.cornell.mannlib.vivo.auth.policy.SelfEditorRelationshipPolicy
SelfEditorRelationshipPolicy.Setup - Class in edu.cornell.mannlib.vivo.auth.policy: When the system starts up, install the policy.
servletContext - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.AjaxVisualizationController
servletContext - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.ShortURLVisualizationController
servletContext - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.StandardVisualizationController
setActivityDate(String) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Activity
setActivityLabel(String) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Activity
setActivityType(String) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Activity
setAPiLevelPublic() - Static method in class edu.cornell.mannlib.vivo.orcid.controller.OrcidAbstractHandler
setBackgroundRDFService(RDFService) - Static method in class edu.cornell.mannlib.vitro.webapp.visualization.utilities.CachingRDFServiceExecutor: Set the RDF service to be used for background threads (called from a startup servlet)
setBuiltFromCacheTime(Date) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.collaborationutils.CollaborationData
setCollaboratorName(String) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Collaborator
setContextModels(ContextModelAccess) - Method in class edu.cornell.mannlib.vitro.webapp.searchindex.documentBuilding.CalculateParameters
setContextModels(ContextModelAccess) - Method in class edu.cornell.mannlib.vitro.webapp.searchindex.extensions.LabelsAcrossContextNodes
setDownloadDataLink(String) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.SparklineData
setEarliestRenderedGrantYear(Integer) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.SparklineData
setEarliestRenderedPublicationYear(Integer) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.SparklineData
setEarliestYearConsidered(Integer) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.SparklineData
setEntityClass(VOConstants.EntityClassType) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.SubEntity
setEntityLabel(String) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Entity
setEntityURI(String) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.json.JsonObject
setFields(EditConfigurationVTwo, VitroRequest, String) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddAuthorsToInformationResourceGenerator: Set Fields and supporting methods
setFields(EditConfigurationVTwo, VitroRequest, String, List<VClass>) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddConceptThroughObjectPropertyGenerator
setFields(EditConfigurationVTwo, VitroRequest, String) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddEditorsToInformationResourceGenerator: Set Fields and supporting methods
setFields(EditConfigurationVTwo, VitroRequest, String) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.VIVODefaultAddMissingIndividualFormGenerator
setFullTimelineNetworkLink(String) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.SparklineData
setIncomingProperty(String) - Method in class edu.cornell.mannlib.vitro.webapp.searchindex.extensions.LabelsAcrossContextNodes
setIndividualLabel(String) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.ConstructedModel
setIndividualLabel(String) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Individual
setLabel(String) - Method in class edu.cornell.mannlib.vitro.webapp.searchindex.extensions.LabelsAcrossContextNodes
setLabel(String) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.json.JsonObject
setLabel(String) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.json.MapOfScience
setLastCachedAtDateTime(String) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.json.JsonObject
setLastCachedAtDateTime(String) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.json.MapOfScience
setLastCachedAtDateTime(String) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.SubEntity
setLatestRenderedGrantYear(Integer) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.SparklineData
setLatestRenderedPublicationYear(Integer) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.SparklineData
setNumOfYearsToBeRendered(int) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.SparklineData
setOrganizationTypes(List<String>) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.json.JsonObject
setOrganizationTypes(Set<String>) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.json.JsonObject
setOutgoingProperty(String) - Method in class edu.cornell.mannlib.vitro.webapp.searchindex.extensions.LabelsAcrossContextNodes
setParentURIToLabel(Set<Individual>) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.json.SubjectEntityJSON
setPublishedInJournal(String) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.MapOfScienceActivity
setPubsMapped(int) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.json.MapOfScience
setPubsWithInvalidJournals(int) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.json.MapOfScience
setPubsWithNoJournals(int) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.json.MapOfScience
setRenderedSparks(Integer) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.SparklineData
setShortVisMode(boolean) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.SparklineData
setSubdisciplineActivity(Map<Integer, Float>) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.json.MapOfScience
setSubjectEntityLabel(String) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.json.SubjectEntityJSON
setSubjectEntityURI(String) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.json.SubjectEntityJSON
setTemplate(EditConfigurationVTwo, VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddAssociatedConceptGenerator
setTemplate(EditConfigurationVTwo, VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddGrantRoleToPersonGenerator
setTemplate(EditConfigurationVTwo, VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddUserDefinedConceptGenerator
setTemplateName() - Method in class edu.cornell.mannlib.vitro.webapp.utils.dataGetter.InternalClassesDataGetter
setTotalCollaborationshipCount(Integer) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.SparklineData
setType(String) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.json.MapOfScience
setUnknownYearGrants(Integer) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.SparklineData
setUnknownYearPublications(Integer) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.SparklineData
Setup() - Constructor for class edu.cornell.mannlib.vitro.webapp.controller.individual.VIVOIndividualResponseBuilderExtension.Setup
Setup() - Constructor for class edu.cornell.mannlib.vivo.auth.policy.SelfEditorRelationshipPolicy.Setup
setupConfig(VitroRequest, HttpSession) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddEditWebpageFormGenerator
setupVariableNames() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.preprocessors.RoleToActivityPredicatePreprocessor
setupVariableNames() - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.preprocessors.RoleToPredicatePreprocessor
setUri(String) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.json.MapOfScience
setUrisAndLiteralsOnForm(EditConfigurationVTwo, VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddAuthorsToInformationResourceGenerator
setUrisAndLiteralsOnForm(EditConfigurationVTwo, VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddEditorsToInformationResourceGenerator
setUrisAndLiteralsOnForm(EditConfigurationVTwo, VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.VIVODefaultAddMissingIndividualFormGenerator
setVisContainerDivID(String) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.SparklineData
setVisMode(String) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.json.JsonObject
setYearToActivityCount(List<List<Integer>>) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.json.JsonObject
setYearToActivityCount(Map<String, Integer>) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.SparklineData
setYearToEntityCountDataTable(List<YearToEntityCountDataElement>) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.SparklineData
SHORT_SPARKLINE_VIS_MODE - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants
SHORT_URL_REQUEST_PATTERN - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants
SHORT_URL_VISUALIZATION_REQUEST_PREFIX - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants
shortTitle - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
ShortURLVisualizationController - Class in edu.cornell.mannlib.vitro.webapp.controller.visualization: Services a standard visualization request, which involves templates.
ShortURLVisualizationController() - Constructor for class edu.cornell.mannlib.vitro.webapp.controller.visualization.ShortURLVisualizationController
show500InternalServerError(String) - Method in class edu.cornell.mannlib.vivo.orcid.controller.OrcidAbstractHandler
showConfirmationPage(OrcidConfirmationState.Progress, OrcidProfile...) - Method in class edu.cornell.mannlib.vivo.orcid.controller.OrcidAbstractHandler
showConfirmationPage() - Method in class edu.cornell.mannlib.vivo.orcid.controller.OrcidAbstractHandler
showError - Variable in class org.vivoweb.webapp.createandlink.Citation
shutdown() - Method in class edu.cornell.mannlib.vitro.webapp.searchindex.documentBuilding.CalculateParameters
shutdown() - Method in class edu.cornell.mannlib.vitro.webapp.searchindex.extensions.LabelsAcrossContextNodes
SiteAdminSetup - Class in org.vivoweb.webapp.startup
SiteAdminSetup() - Constructor for class org.vivoweb.webapp.startup.SiteAdminSetup
SiteMapServlet - Class in org.vivoweb.webapp.sitemap
SiteMapServlet() - Constructor for class org.vivoweb.webapp.sitemap.SiteMapServlet
slugify(String) - Static method in class edu.cornell.mannlib.vitro.webapp.visualization.visutils.UtilityFunctions: Currently the approach for slugifying filenames is naive.
source - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
source - Variable in class org.vivoweb.webapp.createandlink.crossref.CrossrefCiteprocJSONModel
SparklineData - Class in edu.cornell.mannlib.vitro.webapp.visualization.valueobjects
SparklineData() - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.SparklineData
sparqlSelectQuery(RDFService, ResultSetConsumer) - Method in class edu.cornell.mannlib.vitro.webapp.visualization.visutils.GenericQueryRunner
STANDALONE_RENDER_MODE - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants
StandardVisualizationController - Class in edu.cornell.mannlib.vitro.webapp.controller.visualization: Services a standard visualization request, which involves templates.
StandardVisualizationController() - Constructor for class edu.cornell.mannlib.vitro.webapp.controller.visualization.StandardVisualizationController
START_YEAR_LABEL - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.constants.QueryFieldLabels
startIndexing() - Method in class edu.cornell.mannlib.vitro.webapp.searchindex.extensions.LabelsAcrossContextNodes
stashFileSizeException() - Method in class edu.cornell.mannlib.vitro.webapp.controller.harvester.FileHarvestController
state - Variable in class edu.cornell.mannlib.vivo.orcid.controller.OrcidAbstractHandler
staticOrdering - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel.NameField
status - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
status - Variable in class org.vivoweb.webapp.createandlink.crossref.CrossrefCiteprocJSONModel
status - Variable in class org.vivoweb.webapp.createandlink.ResourceModel
StringArrayDeserializer - Class in org.vivoweb.webapp.createandlink.utils
StringArrayDeserializer() - Constructor for class org.vivoweb.webapp.createandlink.utils.StringArrayDeserializer
stripConceptId(String) - Method in class edu.cornell.mannlib.semservices.service.impl.AgrovocService
stripConceptId(String) - Method in class edu.cornell.mannlib.semservices.service.impl.GemetService
stripConceptId(String) - Method in class edu.cornell.mannlib.semservices.service.impl.LCSHService
stripConceptId(String) - Method in class edu.cornell.mannlib.semservices.service.impl.UMLSService
SUB_DISCIPLINE_ID_TO_DISCIPLINE_ID - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.constants.MapOfScienceConstants
SUB_DISCIPLINE_ID_TO_LABEL - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.constants.MapOfScienceConstants
SUBDISCIPLINE_TO_ACTIVTY_VIS_MODE - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants
SubEntity - Class in edu.cornell.mannlib.vitro.webapp.visualization.valueobjects
SubEntity(String) - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.SubEntity
SubEntity(String, String) - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.SubEntity
subject - Variable in class org.vivoweb.webapp.createandlink.crossref.CrossrefCiteprocJSONModel
subject - Variable in class org.vivoweb.webapp.createandlink.ResourceModel
SubjectEntityJSON - Class in edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.json
SubjectEntityJSON(String, String, Set<Individual>) - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.json.SubjectEntityJSON
SubjectEntityJSON(String, String, Map<String, String>) - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.json.SubjectEntityJSON
SubjectHasMailingAddressGenerator - Class in edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators
SubjectHasMailingAddressGenerator() - Constructor for class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.SubjectHasMailingAddressGenerator
SubjectHasPhoneFaxNumberGenerator - Class in edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators
SubjectHasPhoneFaxNumberGenerator() - Constructor for class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.SubjectHasPhoneFaxNumberGenerator
submitted - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
submitted - Variable in class org.vivoweb.webapp.createandlink.crossref.CrossrefCiteprocJSONModel
SUBORGANIZATION_LABEL - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.constants.QueryFieldLabels
SUBORGANIZATION_TYPE - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.constants.QueryFieldLabels
SUBORGANIZATION_TYPE_LABEL - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.constants.QueryFieldLabels
SUBORGANIZATION_URL - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.constants.QueryFieldLabels
suffix - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel.NameField
suffix - Variable in class org.vivoweb.webapp.createandlink.crossref.CrossrefCiteprocJSONModel.NameField
SYNTAX - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.AjaxVisualizationController
SYNTAX - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.DataVisualizationController
SYNTAX - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.ShortURLVisualizationController
SYNTAX - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.StandardVisualizationController
SYNTAX - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.coauthorship.CoAuthorshipQueryRunner
SYNTAX - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.coprincipalinvestigator.CoPIGrantCountConstructQueryRunner
SYNTAX - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.coprincipalinvestigator.CoPIGrantCountQueryRunner
SYNTAX - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.modelconstructor.PersonToGrantsModelConstructor
SYNTAX - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.persongrantcount.PersonGrantCountQueryRunner
SYNTAX - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.personpubcount.PersonPublicationCountQueryRunner
SYNTAX - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.visutils.AllPropertiesQueryRunner
SYNTAX - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.visutils.GenericQueryRunner
SYNTAX - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.visutils.GenericQueryRunnerOnModel

T

TemplateModelSetup - Class in org.vivoweb.webapp.startup
TemplateModelSetup() - Constructor for class org.vivoweb.webapp.startup.TemplateModelSetup
TemporalGrantVisualizationRequestHandler - Class in edu.cornell.mannlib.vitro.webapp.visualization.temporalgraph
TemporalGrantVisualizationRequestHandler() - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.temporalgraph.TemporalGrantVisualizationRequestHandler
temporalGraphUrl() - Method in class edu.cornell.mannlib.vitro.webapp.web.templatemodels.individual.VIVOIndividualTemplateModel
TemporalPublicationVisualizationRequestHandler - Class in edu.cornell.mannlib.vitro.webapp.visualization.temporalgraph
TemporalPublicationVisualizationRequestHandler() - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.temporalgraph.TemporalPublicationVisualizationRequestHandler
THUMBNAIL_FILENAME - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.constants.QueryFieldLabels
THUMBNAIL_LOCATION_URL - Static variable in class edu.cornell.mannlib.vitro.webapp.visualization.constants.QueryFieldLabels
thumbnailUrl - Variable in class edu.cornell.mannlib.vitro.webapp.visualization.model.Person
title - Variable in class org.vivoweb.webapp.createandlink.Citation
title - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
title - Variable in class org.vivoweb.webapp.createandlink.crossref.CrossrefCiteprocJSONModel
title - Variable in class org.vivoweb.webapp.createandlink.ResourceModel
titleShort - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
ToolsRequestHandler - Class in edu.cornell.mannlib.vitro.webapp.visualization.tools
ToolsRequestHandler() - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.tools.ToolsRequestHandler
toString() - Method in class edu.cornell.mannlib.vitro.webapp.searchindex.documentBuilding.CalculateParameters
toString() - Method in class edu.cornell.mannlib.vitro.webapp.searchindex.extensions.LabelsAcrossContextNodes
toString() - Method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.SubEntity
toString() - Method in class edu.cornell.mannlib.vivo.auth.policy.SelfEditorRelationshipPolicy
trackModel(String, Model) - Static method in class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.ConstructedModelTracker
translator - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
translator - Variable in class org.vivoweb.webapp.createandlink.crossref.CrossrefCiteprocJSONModel
translator - Variable in class org.vivoweb.webapp.createandlink.ResourceModel
type - Variable in class org.vivoweb.webapp.createandlink.Citation
type - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
type - Variable in class org.vivoweb.webapp.createandlink.crossref.CrossrefCiteprocJSONModel
type - Variable in class org.vivoweb.webapp.createandlink.ResourceModel
typeUri - Variable in class org.vivoweb.webapp.createandlink.Citation

U

UMLSService - Class in edu.cornell.mannlib.semservices.service.impl
UMLSService() - Constructor for class edu.cornell.mannlib.semservices.service.impl.UMLSService
UniqueIDGenerator - Class in edu.cornell.mannlib.vitro.webapp.visualization.visutils
UniqueIDGenerator() - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.visutils.UniqueIDGenerator
UNIVERSITY_COMPARISON_VIS_MODE - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants
uri - Variable in class edu.cornell.mannlib.vitro.webapp.visualization.model.Person
URL - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
URL - Variable in class org.vivoweb.webapp.createandlink.crossref.CrossrefCiteprocJSONModel
URL - Variable in class org.vivoweb.webapp.createandlink.ResourceModel
URL_ENCODING_SCHEME - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.AjaxVisualizationController
URL_ENCODING_SCHEME - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.DataVisualizationController
URL_ENCODING_SCHEME - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.ShortURLVisualizationController
URL_ENCODING_SCHEME - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.StandardVisualizationController
useProcessor(VitroRequest) - Method in class edu.cornell.mannlib.vitro.webapp.utils.menuManagement.ProcessInternalClasses: Process submission
UTILITIES_VIS - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants
UtilitiesRequestHandler - Class in edu.cornell.mannlib.vitro.webapp.visualization.utilities: This request handler is used when you need helpful information to add more context to the visualization.
UtilitiesRequestHandler() - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.utilities.UtilitiesRequestHandler
UtilityFunctions - Class in edu.cornell.mannlib.vitro.webapp.visualization.visutils
UtilityFunctions() - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.visutils.UtilityFunctions

V

validate(EditConfigurationVTwo, MultiValueEditSubmission) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.AutocompleteRequiredInputValidator
validate(EditConfigurationVTwo, MultiValueEditSubmission) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.FirstAndLastNameValidator
validate(EditConfigurationVTwo, MultiValueEditSubmission) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.PersonHasPublicationValidator
validate(EditConfigurationVTwo, MultiValueEditSubmission) - Method in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.PublicationHasAuthorValidator
validate() - Method in class edu.cornell.mannlib.vitro.webapp.searchindex.extensions.LabelsAcrossContextNodes
valueOf(String) - Static method in enum edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddGrantRoleToPersonGenerator.RoleActivityOptionTypes: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddRoleToPersonTwoStageGenerator.RoleActivityOptionTypes: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum edu.cornell.mannlib.vitro.webapp.visualization.constants.VisConstants.DataVisMode: Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum edu.cornell.mannlib.vitro.webapp.visualization.constants.VOConstants.EntityClassType: Returns the enum constant of this type with the specified name.
values() - Static method in enum edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddGrantRoleToPersonGenerator.RoleActivityOptionTypes: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.AddRoleToPersonTwoStageGenerator.RoleActivityOptionTypes: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum edu.cornell.mannlib.vitro.webapp.visualization.constants.VisConstants.DataVisMode: Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum edu.cornell.mannlib.vitro.webapp.visualization.constants.VOConstants.EntityClassType: Returns an array containing the constants of this enum type, in the order they are declared.
VCARD_FAMILYNAME - Static variable in class org.vivoweb.webapp.controller.freemarker.CreateAndLinkResourceController
VCARD_GIVENNAME - Static variable in class org.vivoweb.webapp.controller.freemarker.CreateAndLinkResourceController
VCARD_HAS_NAME - Static variable in class org.vivoweb.webapp.controller.freemarker.CreateAndLinkResourceController
VCARD_HAS_URL - Static variable in class org.vivoweb.webapp.controller.freemarker.CreateAndLinkResourceController
VCARD_INDIVIDUAL - Static variable in class org.vivoweb.webapp.controller.freemarker.CreateAndLinkResourceController
VCARD_KIND - Static variable in class org.vivoweb.webapp.controller.freemarker.CreateAndLinkResourceController
VCARD_NAME - Static variable in class org.vivoweb.webapp.controller.freemarker.CreateAndLinkResourceController
VCARD_URL_CLASS - Static variable in class org.vivoweb.webapp.controller.freemarker.CreateAndLinkResourceController
VCARD_URL_PROPERTY - Static variable in class org.vivoweb.webapp.controller.freemarker.CreateAndLinkResourceController
version - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
version - Variable in class org.vivoweb.webapp.createandlink.crossref.CrossrefCiteprocJSONModel
VIS_CONTAINER_KEY - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants
VIS_MODE_KEY - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants
VIS_TYPE_KEY - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants
VisConstants - Class in edu.cornell.mannlib.vitro.webapp.visualization.constants: This contains constants related to the visualization code.
VisConstants() - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.constants.VisConstants
VisConstants.DataVisMode - Enum in edu.cornell.mannlib.vitro.webapp.visualization.constants
VISUALIZATION_URL_PREFIX - Static variable in class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants
VisualizationCaches - Class in edu.cornell.mannlib.vitro.webapp.visualization.utilities: Holder for the caches we are using in the visualizations String.intern() was a problem pre-Java 7, but has greater utility now.
VisualizationCaches() - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.utilities.VisualizationCaches
VisualizationFrameworkConstants - Class in edu.cornell.mannlib.vitro.webapp.controller.visualization
VisualizationFrameworkConstants() - Constructor for class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants
VisualizationRequestHandler - Interface in edu.cornell.mannlib.vitro.webapp.visualization.visutils: This interface is being implemented by all the visualization request handlers like PersonLevelRequestHandler, PersonPublicationCountRequestHandler, UtilitiesRequestHandler etc.
VisualizationsDependencyInjector - Class in edu.cornell.mannlib.vitro.webapp.controller.visualization
VisualizationsDependencyInjector() - Constructor for class edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationsDependencyInjector
VisualizationSetup - Class in edu.cornell.mannlib.vitro.webapp.visualization.setup: Setup class for Visualizations, in order to record a context-referenced RDFService If this class is missing, caches can not be refreshed in the background
VisualizationSetup() - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.setup.VisualizationSetup
VIVO_AUTHORSHIP - Static variable in class org.vivoweb.webapp.controller.freemarker.CreateAndLinkResourceController
VIVO_DATETIME - Static variable in class org.vivoweb.webapp.controller.freemarker.CreateAndLinkResourceController
VIVO_DATETIMEPRECISION - Static variable in class org.vivoweb.webapp.controller.freemarker.CreateAndLinkResourceController
VIVO_DATETIMEVALUE - Static variable in class org.vivoweb.webapp.controller.freemarker.CreateAndLinkResourceController
VIVO_EDITORSHIP - Static variable in class org.vivoweb.webapp.controller.freemarker.CreateAndLinkResourceController
VIVO_HASPUBLICATIONVENUE - Static variable in class org.vivoweb.webapp.controller.freemarker.CreateAndLinkResourceController
VIVO_PMCID - Static variable in class org.vivoweb.webapp.controller.freemarker.CreateAndLinkResourceController
VIVO_PUBLICATIONVENUEFOR - Static variable in class org.vivoweb.webapp.controller.freemarker.CreateAndLinkResourceController
VIVO_PUBLISHER - Static variable in class org.vivoweb.webapp.controller.freemarker.CreateAndLinkResourceController
VIVO_PUBLISHER_CLASS - Static variable in class org.vivoweb.webapp.controller.freemarker.CreateAndLinkResourceController
VIVO_PUBLISHER_OF - Static variable in class org.vivoweb.webapp.controller.freemarker.CreateAndLinkResourceController
VIVO_RANK - Static variable in class org.vivoweb.webapp.controller.freemarker.CreateAndLinkResourceController
VIVO_RELATEDBY - Static variable in class org.vivoweb.webapp.controller.freemarker.CreateAndLinkResourceController
VIVO_RELATES - Static variable in class org.vivoweb.webapp.controller.freemarker.CreateAndLinkResourceController
VivoBaseGenerator - Class in edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators: Adds static Strings that may be useful for forms that are part of VIVO.
VivoBaseGenerator() - Constructor for class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.VivoBaseGenerator
VIVODefaultAddMissingIndividualFormGenerator - Class in edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators: Generates the edit configuration for a default property form.
VIVODefaultAddMissingIndividualFormGenerator() - Constructor for class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.VIVODefaultAddMissingIndividualFormGenerator
VIVOIndividualResponseBuilderExtension - Class in edu.cornell.mannlib.vitro.webapp.controller.individual
VIVOIndividualResponseBuilderExtension() - Constructor for class edu.cornell.mannlib.vitro.webapp.controller.individual.VIVOIndividualResponseBuilderExtension
VIVOIndividualResponseBuilderExtension.Setup - Class in edu.cornell.mannlib.vitro.webapp.controller.individual
VIVOIndividualSearchResult - Class in edu.cornell.mannlib.vitro.webapp.web.templatemodels.searchresult
VIVOIndividualSearchResult(Individual, VitroRequest) - Constructor for class edu.cornell.mannlib.vitro.webapp.web.templatemodels.searchresult.VIVOIndividualSearchResult
VIVOIndividualTemplateModel - Class in edu.cornell.mannlib.vitro.webapp.web.templatemodels.individual
VIVOIndividualTemplateModelBuilder - Class in edu.cornell.mannlib.vitro.webapp.web.templatemodels.individual
VIVOIndividualTemplateModelBuilder() - Constructor for class edu.cornell.mannlib.vitro.webapp.web.templatemodels.individual.VIVOIndividualTemplateModelBuilder
VIVOListedIndividual - Class in edu.cornell.mannlib.vitro.webapp.web.templatemodels.individuallist
VIVOListedIndividualBuilder - Class in edu.cornell.mannlib.vitro.webapp.web.templatemodels.individuallist
VIVOListedIndividualBuilder() - Constructor for class edu.cornell.mannlib.vitro.webapp.web.templatemodels.individuallist.VIVOListedIndividualBuilder
VIVOManageLabelsGenerator - Class in edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators: This generator selects the actual generator to be employed based on whether the individual is a Person or another individual.
VIVOManageLabelsGenerator() - Constructor for class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.VIVOManageLabelsGenerator
VIVOMenuManagementDataUtils - Class in edu.cornell.mannlib.vitro.webapp.utils.menuManagement
VIVOMenuManagementDataUtils() - Constructor for class edu.cornell.mannlib.vitro.webapp.utils.menuManagement.VIVOMenuManagementDataUtils
VIVONewIndividualFormGenerator - Class in edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators: Generates the edit configuration for a default property form.
VIVONewIndividualFormGenerator() - Constructor for class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.VIVONewIndividualFormGenerator
vivoUri - Variable in class org.vivoweb.webapp.createandlink.Citation
VocabSourceDescription - Class in edu.cornell.mannlib.vitro.webapp.utils.ConceptSearchService
VocabSourceDescription(String, String, String, String) - Constructor for class edu.cornell.mannlib.vitro.webapp.utils.ConceptSearchService.VocabSourceDescription
VOConstants - Class in edu.cornell.mannlib.vitro.webapp.visualization.constants: This contains the constants related to all the value objects.
VOConstants() - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.constants.VOConstants
VOConstants.EntityClassType - Enum in edu.cornell.mannlib.vitro.webapp.visualization.constants
volume - Variable in class org.vivoweb.webapp.createandlink.Citation
volume - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
volume - Variable in class org.vivoweb.webapp.createandlink.crossref.CrossrefCiteprocJSONModel
volume - Variable in class org.vivoweb.webapp.createandlink.ResourceModel
vreq - Variable in class edu.cornell.mannlib.vivo.orcid.controller.OrcidAbstractHandler

W

wadf - Variable in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.preprocessors.RoleToPredicatePreprocessor
wdf - Variable in class edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.preprocessors.AddAssociatedConceptsPreprocessor
writeChanges(RDFService, Model, Model) - Method in class org.vivoweb.webapp.controller.freemarker.CreateAndLinkResourceController: Determine the difference between the "existing" and "updated" models, and write the changes to VIVO

Y

year - Variable in class org.vivoweb.webapp.createandlink.ResourceModel.DateField
yearSuffix - Variable in class org.vivoweb.webapp.createandlink.CiteprocJSONModel
YearToEntityCountDataElement - Class in edu.cornell.mannlib.vitro.webapp.visualization.valueobjects: This object is used to store information about the yearToEntityCount Map in the format easily expressed to Google Visualization's DataTableAPI.
YearToEntityCountDataElement(int, String, int) - Constructor for class edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.YearToEntityCountDataElement

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