pro.fessional.meepo.sack

Class Gene

java.lang.Object

pro.fessional.meepo.sack.Gene

public class Gene
extends Object

Since:

2020-10-15

Author:

trydofor

Field Summary

Fields

Modifier and Type	Field and Description
long	born
List<Exon>	exon
Set<String>	rngs

Constructor Summary

Constructors

Constructor and Description
Gene(List<Exon> xna, Set<String> rng)

Method Summary

Modifier and Type	Method and Description
@NotNull String	build() 通过gene构造原始文本，有用调试。
String	graph() 打印层级语法树，并校验edge的连续性
int	graph(Writer buff, List<Exon> exon, int level, int start) 打印层级语法树，并校验edge的连续性
@NotNull String	merge(Map<String,Object> ctx) 使用context合并
void	merge(Map<String,Object> ctx, Writer out) 使用context合并

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

born

public final long born

exon

public final List<Exon> exon

rngs

public final Set<String> rngs

Constructor Detail

Gene

public Gene(List<Exon> xna,
            Set<String> rng)

Method Detail

merge

@NotNull
public @NotNull String merge(Map<String,Object> ctx)

使用context合并

Parameters:

ctx - 上下文

Returns:

结果

merge

public void merge(Map<String,Object> ctx,
                  Writer out)

使用context合并

Parameters:

ctx - 上下文

out - 输出

build

@NotNull
public @NotNull String build()

通过gene构造原始文本，有用调试。

Returns:

template

graph

public String graph()

打印层级语法树，并校验edge的连续性

Returns:

语法树

graph

public int graph(Writer buff,
                 List<Exon> exon,
                 int level,
                 int start)

打印层级语法树，并校验edge的连续性

Parameters:

buff - 输出

exon - 列表

level - 层级，1-base

start - 校验起点（包含），0-base

Returns:

校验终点，不包含