B D E F G H I L M N O R S U V W

B

BIG_DECIMAL_ID - Static variable in class uno.informatics.data.DataTypeConstants

BIG_INTEGER_ID - Static variable in class uno.informatics.data.DataTypeConstants

BIG_NUMBER_IDS - Static variable in class uno.informatics.data.DataTypeConstants

BOOLEAN_ID - Static variable in class uno.informatics.data.DataTypeConstants

D

Data - Interface in uno.informatics.data

DataOption - Class in uno.informatics.data

DataOption(String) - Constructor for class uno.informatics.data.DataOption

DataOption(String, Object) - Constructor for class uno.informatics.data.DataOption

DataReader - Interface in uno.informatics.data.io

Dataset - Interface in uno.informatics.data

DatasetException - Exception in uno.informatics.data.dataset

DatasetException(String) - Constructor for exception uno.informatics.data.dataset.DatasetException

DatasetException(Throwable) - Constructor for exception uno.informatics.data.dataset.DatasetException

DatasetException() - Constructor for exception uno.informatics.data.dataset.DatasetException

DatasetException(String, Throwable) - Constructor for exception uno.informatics.data.dataset.DatasetException

DataType - Enum in uno.informatics.data

DataTypeConstants - Class in uno.informatics.data

DataTypeConstants() - Constructor for class uno.informatics.data.DataTypeConstants

DataWriter - Interface in uno.informatics.data.io

DATE_ID - Static variable in class uno.informatics.data.DataTypeConstants

DEFAULT_TYPE_IDS - Static variable in class uno.informatics.data.DataTypeConstants

DOUBLE_ID - Static variable in class uno.informatics.data.DataTypeConstants

E

Entity - Interface in uno.informatics.data

F

Feature - Interface in uno.informatics.data

FeatureData - Interface in uno.informatics.data.dataset

A dataset that consists of columns recorded for a specific feature, with each row providing one value for each feature.

FeatureDataRow - Interface in uno.informatics.data.dataset

FileType - Enum in uno.informatics.data.io

findValue(DataOption[], String, Class<T>) - Static method in class uno.informatics.data.DataOption

findValue(DataOption[], String, Class<T>, T) - Static method in class uno.informatics.data.DataOption

FLOAT_ID - Static variable in class uno.informatics.data.DataTypeConstants

G

Germplasm - Interface in uno.informatics.data

getAbbreviation() - Method in enum uno.informatics.data.DataType

getAbbreviation() - Method in interface uno.informatics.data.Entity

Gets a short abbreviation that can be used in place of the name.

getAbbreviation() - Method in enum uno.informatics.data.ScaleType

getAllTypes() - Static method in enum uno.informatics.data.DataType

getAllTypes() - Static method in enum uno.informatics.data.ScaleType

getColumnCount() - Method in interface uno.informatics.data.dataset.FeatureDataRow

Gets the size of the row

getColumnCount() - Method in interface uno.informatics.data.dataset.MatrixData

Gets the column dimension size of the matrix

getColumnHeader(int) - Method in interface uno.informatics.data.dataset.MatrixData

Gets the column header at a given row

getColumnHeaders() - Method in interface uno.informatics.data.dataset.MatrixData

Gets a list of the column headers for the matrix

getColumnHeadersAsArray() - Method in interface uno.informatics.data.dataset.MatrixData

Gets an array of the column headers for the matrix

getConversionType(DataType) - Static method in class uno.informatics.data.DataTypeConstants

Gets the conversion type for data type

getDataset() - Method in interface uno.informatics.data.Data

Gets the dataset to which this data belongs

getDataType(int) - Static method in class uno.informatics.data.DataTypeConstants

Gets the data type for the conversion type

getDataType() - Method in interface uno.informatics.data.Scale

Gets the data type for this scale.

getDataTypeById(int) - Static method in enum uno.informatics.data.DataType

Gets the data type for the given type id

getDefaultEncoding() - Method in enum uno.informatics.data.ScaleType

getDescription() - Method in interface uno.informatics.data.Entity

Get a description for this entity

getEndDate() - Method in interface uno.informatics.data.Study

Gets the end date of the study

getFeatures() - Method in interface uno.informatics.data.dataset.FeatureData

Gets the features in the dataset as a list

getFeaturesAsArray() - Method in interface uno.informatics.data.dataset.FeatureData

Gets the features in the dataset as an array

getHeader(int) - Method in interface uno.informatics.data.Data

Get the header of an entry by index.

getHeader() - Method in interface uno.informatics.data.dataset.FeatureDataRow

Get the header for the row, or null if the row has no header

getId() - Method in enum uno.informatics.data.DataType

getIDs() - Method in interface uno.informatics.data.Data

Get the set of all integer IDs corresponding to an item in the data set.

getKey() - Method in class uno.informatics.data.DataOption

getMaximumValue() - Method in interface uno.informatics.data.Scale

Gets the maximum value in the scale.

getMethod() - Method in interface uno.informatics.data.Feature

Gets the method by which is feature is measured

getMinimumValue() - Method in interface uno.informatics.data.Scale

Gets the minimum value in the scale.

getName() - Method in enum uno.informatics.data.DataType

getName() - Method in enum uno.informatics.data.io.FileType

getName() - Method in enum uno.informatics.data.ScaleType

getName() - Method in interface uno.informatics.data.SimpleEntity

Gets a human readable name of the entity being identified.

getOntology() - Method in interface uno.informatics.data.OntologyTerm

Gets the ontology to which this term belongs

getRow(int) - Method in interface uno.informatics.data.dataset.FeatureData

Gets the row at a specific position

getRowCount() - Method in interface uno.informatics.data.dataset.FeatureData

Gets the number of rows in the dataset

getRowCount() - Method in interface uno.informatics.data.dataset.MatrixData

Gets the row dimension size of the matrix

getRowHeader(int) - Method in interface uno.informatics.data.dataset.MatrixData

Gets the row header at a given row

getRowHeaders() - Method in interface uno.informatics.data.dataset.FeatureData

Get the all the row headers

getRowHeaders() - Method in interface uno.informatics.data.dataset.MatrixData

Gets a list of the row headers for the matrix

getRowHeadersAsArray() - Method in interface uno.informatics.data.dataset.FeatureData

Get the all the row headers as an array

getRowHeadersAsArray() - Method in interface uno.informatics.data.dataset.MatrixData

Gets an array of the row headers for the matrix

getRows() - Method in interface uno.informatics.data.dataset.FeatureData

Gets all the rows in the dataset as a list

getRowsAsArray() - Method in interface uno.informatics.data.dataset.FeatureData

Gets all the rows in the dataset as an array

getScale() - Method in interface uno.informatics.data.Method

Gets the scale for this method

getScaleType() - Method in interface uno.informatics.data.Scale

Gets the scale type for this scale.

getSize() - Method in interface uno.informatics.data.Data

Get the number of entries in the data.

getSize() - Method in interface uno.informatics.data.Dataset

Gets the size of the data, which is the size of the set that is the union all the associated data object.

getSource() - Method in interface uno.informatics.data.Germplasm

Gets the source of the Germplasm.

getStartDate() - Method in interface uno.informatics.data.Study

Gets the start date of the study

getStudy() - Method in interface uno.informatics.data.Dataset

Gets the study to which this dataset belongs

getType() - Method in interface uno.informatics.data.Entity

Gets the type of this entity as defined in a specific ontology.

getTypeByAbbreviation(String) - Static method in enum uno.informatics.data.DataType

getTypeByAbbreviation(String) - Static method in enum uno.informatics.data.ScaleType

getTypeByName(String) - Static method in enum uno.informatics.data.DataType

getTypeByName(String) - Static method in enum uno.informatics.data.ScaleType

getUniqueIdentifier() - Method in interface uno.informatics.data.SimpleEntity

Gets the unique identifier entity, which may be a LSID or other type of identifier

getValue() - Method in class uno.informatics.data.DataOption

getValue(int) - Method in interface uno.informatics.data.dataset.FeatureDataRow

Gets a value in the row at a specific column

getValue(int, int) - Method in interface uno.informatics.data.dataset.MatrixData

Gets the value in the matrix at a given row and column

getValueFeature() - Method in interface uno.informatics.data.dataset.MatrixData

Gets the feature that describes the values in the matrix

getValues() - Method in interface uno.informatics.data.dataset.FeatureData

Gets all the values in the database as a list of lists

getValues() - Method in interface uno.informatics.data.dataset.FeatureDataRow

Gets all the values in the Row as a list

getValues() - Method in interface uno.informatics.data.dataset.MatrixData

Gets all the values in the matrix as a list of lists

getValues() - Method in interface uno.informatics.data.Scale

Gets all possible values for this scale.

getValuesAsArray() - Method in interface uno.informatics.data.dataset.FeatureData

Gets all the values in the database as a 2-dimensional array

getValuesAsArray() - Method in interface uno.informatics.data.dataset.FeatureDataRow

Gets all the values in the Row as an array

getValuesAsArray() - Method in interface uno.informatics.data.dataset.MatrixData

Gets all values as 2-dimension array

H

hasColumnHeaders() - Method in interface uno.informatics.data.dataset.MatrixData

Determines if the matrix has column headers

hasOption(DataOption[], String) - Static method in class uno.informatics.data.DataOption

hasRowHeaders() - Method in interface uno.informatics.data.dataset.MatrixData

Determines if the matrix has row headers

I

indexOf(Object) - Method in interface uno.informatics.data.Scale

Get the index of a value in the list of possible values.

INT_ID - Static variable in class uno.informatics.data.DataTypeConstants

INTEGER_IDS - Static variable in class uno.informatics.data.DataTypeConstants

L

LONG_ID - Static variable in class uno.informatics.data.DataTypeConstants

M

MatrixData<ValueType> - Interface in uno.informatics.data.dataset

API for datasets that consist of a 2-dimensional matrix of elements of a single type.

Method - Interface in uno.informatics.data

N

NUMBER_IDS - Static variable in class uno.informatics.data.DataTypeConstants

O

Ontology - Interface in uno.informatics.data

OntologyTerm - Interface in uno.informatics.data

R

read() - Method in interface uno.informatics.data.io.DataReader

REAL_IDS - Static variable in class uno.informatics.data.DataTypeConstants

S

Scale - Interface in uno.informatics.data

ScaleType - Enum in uno.informatics.data

setDataType(DataType) - Method in interface uno.informatics.data.Scale

setKey(String) - Method in class uno.informatics.data.DataOption

setMaximumValue(Number) - Method in interface uno.informatics.data.Scale

setMinimumValue(Number) - Method in interface uno.informatics.data.Scale

setScaleType(ScaleType) - Method in interface uno.informatics.data.Scale

setValue(Object) - Method in class uno.informatics.data.DataOption

setValues(List<? extends Object>) - Method in interface uno.informatics.data.Scale

SHORT_ID - Static variable in class uno.informatics.data.DataTypeConstants

SIMPLE_ENTITY_ID - Static variable in class uno.informatics.data.DataTypeConstants

SimpleEntity - Interface in uno.informatics.data

STRING_ID - Static variable in class uno.informatics.data.DataTypeConstants

Study - Interface in uno.informatics.data

U

UNKNOWN_ID - Static variable in class uno.informatics.data.DataTypeConstants

uno.informatics.data - package uno.informatics.data

uno.informatics.data.dataset - package uno.informatics.data.dataset

uno.informatics.data.io - package uno.informatics.data.io

V

valueOf(String) - Static method in enum uno.informatics.data.DataType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum uno.informatics.data.io.FileType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum uno.informatics.data.ScaleType

Returns the enum constant of this type with the specified name.

values() - Static method in enum uno.informatics.data.DataType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum uno.informatics.data.io.FileType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum uno.informatics.data.ScaleType

Returns an array containing the constants of this enum type, in the order they are declared.

W

write(Data) - Method in interface uno.informatics.data.io.DataWriter

writeData(Path, FileType, DataOption...) - Method in interface uno.informatics.data.dataset.FeatureData

Writes the data to a file

B D E F G H I L M N O R S U V W